AEM -- Table of Contents (October 15 2009, 75 [20])

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Contents: October 2009, Volume 75, Issue 20

       Environmental Microbiology

       Microbial Ecology

       Methods

       Plant Microbiology

       Public Health Microbiology

       Biodegradation

       Evolutionary and Genomic Microbiology

       Biotechnology

       Genetics and Molecular Biology

       Geomicrobiology

       Physiology

       Food Microbiology

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To see an article, click its [Full Text], [Abstract] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Environmental Microbiology:

Fungal Diversity in Deep-Sea Hydrothermal Ecosystems
Thomas Le Calvez, Gaëtan Burgaud, Stéphane Mahé, Georges Barbier, and Philippe Vandenkoornhuyse
Appl. Environ. Microbiol. October 2009 75: 6415-6421; published ahead of print July 24, 2009, doi:10.1128/AEM.00653-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Biphenyl-Metabolizing Bacteria in the Rhizosphere of Horseradish and Bulk Soil Contaminated by Polychlorinated Biphenyls as Revealed by Stable Isotope Probing
Ondrej Uhlik, Katerina Jecna, Martina Mackova, Cestmir Vlcek, Miluse Hroudova, Katerina Demnerova, Vaclav Paces, and Tomas Macek
Appl. Environ. Microbiol. October 2009 75: 6471-6477; published ahead of print August 21, 2009, doi:10.1128/AEM.00466-09
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Microbial Ecology:

Investigation of Associations of Yarrowia lipolytica, Staphylococcus xylosus, and Lactococcus lactis in Culture as a First Step in Microbial Interaction Analysis
S. Mansour, J. Bailly, S. Landaud, C. Monnet, A. S. Sarthou, M. Cocaign-Bousquet, S. Leroy, F. Irlinger, and P. Bonnarme
Appl. Environ. Microbiol. October 2009 75: 6422-6430; published ahead of print August 14, 2009, doi:10.1128/AEM.00228-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Response of Gut Microbiota to Fasting and Hibernation in Syrian Hamsters
Kei Sonoyama, Reiko Fujiwara, Naoki Takemura, Toru Ogasawara, Jun Watanabe, Hiroyuki Ito, and Tatsuya Morita
Appl. Environ. Microbiol. October 2009 75: 6451-6456; published ahead of print August 21, 2009, doi:10.1128/AEM.00692-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies
Mi Zhou, Emma Hernandez-Sanabria, and Le Luo Guan
Appl. Environ. Microbiol. October 2009 75: 6524-6533; published ahead of print August 28, 2009, doi:10.1128/AEM.02815-08
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Comprehensive Census of Bacteria in Clean Rooms by Using DNA Microarray and Cloning Methods
Myron T. La Duc, Shariff Osman, Parag Vaishampayan, Yvette Piceno, Gary Andersen, J. A. Spry, and Kasthuri Venkateswaran
Appl. Environ. Microbiol. October 2009 75: 6559-6567; published ahead of print August 21, 2009, doi:10.1128/AEM.01073-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Methods:

Integrated Capture and Spectroscopic Detection of Viruses
Crystal A. Vargas, Allison A. Wilhelm, Jeremy Williams, Pierre Lucas, Kelly A. Reynolds, and Mark R. Riley
Appl. Environ. Microbiol. October 2009 75: 6431-6440; published ahead of print August 21, 2009, doi:10.1128/AEM.02036-08
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Multiplex PCR for Detection of Botulinum Neurotoxin-Producing Clostridia in Clinical, Food, and Environmental Samples
Dario De Medici, Fabrizio Anniballi, Gary M. Wyatt, Miia Lindström, Ute Messelhäußer, Clare F. Aldus, Elisabetta Delibato, Hannu Korkeala, Michael W. Peck, and Lucia Fenicia
Appl. Environ. Microbiol. October 2009 75: 6457-6461; published ahead of print August 14, 2009, doi:10.1128/AEM.00805-09
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Development and Validation of a Species-Independent Functional Gene Microarray That Targets Lactic Acid Bacteria
Stefan Weckx, Joke Allemeersch, Roel Van der Meulen, Gino Vrancken, Geert Huys, Peter Vandamme, Paul Van Hummelen, and Luc De Vuyst
Appl. Environ. Microbiol. October 2009 75: 6488-6495; published ahead of print August 14, 2009, doi:10.1128/AEM.01055-09
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Versatile Dual-Technology System for Markerless Allele Replacement in Burkholderia pseudomallei
Carolina M. López, Drew A. Rholl, Lily A. Trunck, and Herbert P. Schweizer
Appl. Environ. Microbiol. October 2009 75: 6496-6503; published ahead of print August 21, 2009, doi:10.1128/AEM.01669-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Development of a Single-Plasmid-Based Regulatable Gene Expression System for Borrelia burgdorferi
Christine R. Whetstine, Joyce G. Slusser, and Wolfram R. Zückert
Appl. Environ. Microbiol. October 2009 75: 6553-6558; published ahead of print August 21, 2009, doi:10.1128/AEM.02825-08
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Inducible-Expression Plasmid for Rhodobacter sphaeroides and Paracoccus denitrificans
Alice C. Ind, Steven L. Porter, Mostyn T. Brown, Elaine D. Byles, Jennifer A. de Beyer, Scott A. Godfrey, and Judith P. Armitage
Appl. Environ. Microbiol. October 2009 75: 6613-6615; published ahead of print August 14, 2009, doi:10.1128/AEM.01587-09
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Plant Microbiology:

Comparison of Effects of Compost Amendment and of Single-Strain Inoculation on Root Bacterial Communities of Young Cucumber Seedlings
Maya Ofek, Yitzhak Hadar, and Dror Minz
Appl. Environ. Microbiol. October 2009 75: 6441-6450; published ahead of print August 21, 2009, doi:10.1128/AEM.00736-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Recovery of Nonpathogenic Mutant Bacteria from Tumors Caused by Several Agrobacterium tumefaciens Strains: a Frequent Event?
Pablo Llop, Jesús Murillo, Beatriz Lastra, and María M. López
Appl. Environ. Microbiol. October 2009 75: 6504-6514; published ahead of print August 21, 2009, doi:10.1128/AEM.01867-08
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ACC (1-Aminocyclopropane-1-Carboxylate) Deaminase Activity, a Widespread Trait in Burkholderia Species, and Its Growth-Promoting Effect on Tomato Plants
Janette Onofre-Lemus, Ismael Hernández-Lucas, Lourdes Girard, and Jesús Caballero-Mellado
Appl. Environ. Microbiol. October 2009 75: 6581-6590; published ahead of print August 21, 2009, doi:10.1128/AEM.01240-09
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Public Health Microbiology:

Assessment of Shiga Toxin-Producing Escherichia coli Isolates from Wildlife Meat as Potential Pathogens for Humans
Angelika Miko, Karin Pries, Sabine Haby, Katja Steege, Nadine Albrecht, Gladys Krause, and Lothar Beutin
Appl. Environ. Microbiol. October 2009 75: 6462-6470; published ahead of print August 21, 2009, doi:10.1128/AEM.00904-09
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Longitudinal Study of Escherichia coli O157:H7 in a Beef Cattle Feedlot and Role of High-Level Shedders in Hide Contamination
Terrance M. Arthur, James E. Keen, Joseph M. Bosilevac, Dayna M. Brichta-Harhay, Norasak Kalchayanand, Steven D. Shackelford, Tommy L. Wheeler, Xiangwu Nou, and Mohammad Koohmaraie
Appl. Environ. Microbiol. October 2009 75: 6515-6523; published ahead of print August 14, 2009, doi:10.1128/AEM.00081-09
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Identification of Particle Size Classes Inhibiting Protozoan Recovery from Surface Water Samples via U.S. Environmental Protection Agency Method 1623
Leigh-Anne H. Krometis, Gregory W. Characklis, and Mark D. Sobsey
Appl. Environ. Microbiol. October 2009 75: 6619-6621; published ahead of print August 14, 2009, doi:10.1128/AEM.01136-09
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Biodegradation:

Diversity, Abundance, and Consistency of Microbial Oxygenase Expression and Biodegradation in a Shallow Contaminated Aquifer
Jane M. Yagi and Eugene L. Madsen
Appl. Environ. Microbiol. October 2009 75: 6478-6487; published ahead of print August 21, 2009, doi:10.1128/AEM.01091-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Evolutionary and Genomic Microbiology:

Cryptic Lineages of the Genus Escherichia
Seth T. Walk, Elizabeth W. Alm, David M. Gordon, Jeffrey L. Ram, Gary A. Toranzos, James M. Tiedje, and Thomas S. Whittam
Appl. Environ. Microbiol. October 2009 75: 6534-6544; published ahead of print August 21, 2009, doi:10.1128/AEM.01262-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Biotechnology:

Whole-Cell Biocatalysis for 1-Naphthol Production in Liquid-Liquid Biphasic Systems
S. V. B. Janardhan Garikipati, Angela M. McIver, and Tonya L. Peeples
Appl. Environ. Microbiol. October 2009 75: 6545-6552; published ahead of print August 21, 2009, doi:10.1128/AEM.00434-09
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Genetics and Molecular Biology:

Temperature-Dependent Expression of phzM and Its Regulatory Genes lasI and ptsP in Rhizosphere Isolate Pseudomonas sp. Strain M18
Jiaofang Huang, Yuquan Xu, Hongyan Zhang, Yaqian Li, Xianqing Huang, Bin Ren, and Xuehong Zhang
Appl. Environ. Microbiol. October 2009 75: 6568-6580; published ahead of print August 28, 2009, doi:10.1128/AEM.01148-09
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Cloning of Salmonella enterica Serovar Enteritidis Fimbrial Protein SefA as a Surface Protein in Escherichia coli Confers the Ability To Attach to Eukaryotic Cell Lines
Douglas L. Rank, Mahdi A. Saeed, and Peter M. Muriana
Appl. Environ. Microbiol. October 2009 75: 6622-6625; published ahead of print August 21, 2009, doi:10.1128/AEM.00639-09
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Identification of Flagellar Motility Genes in Yersinia ruckeri by Transposon Mutagenesis
Jason P. Evenhuis, Scott E. LaPatra, David W. Verner-Jeffreys, Inger Dalsgaard, and Timothy J. Welch
Appl. Environ. Microbiol. October 2009 75: 6630-6633; published ahead of print August 21, 2009, doi:10.1128/AEM.01415-09
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Geomicrobiology:

Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation
Michael J. Wilkins, Nathan C. VerBerkmoes, Kenneth H. Williams, Stephen J. Callister, Paula J. Mouser, Hila Elifantz, A. Lucie N'Guessan, Brian C. Thomas, Carrie D. Nicora, Manesh B. Shah, Paul Abraham, Mary S. Lipton, Derek R. Lovley, Robert L. Hettich, Philip E. Long, and Jillian F. Banfield
Appl. Environ. Microbiol. October 2009 75: 6591-6599; published ahead of print August 28, 2009, doi:10.1128/AEM.01064-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Physiology:

Comparative Transcriptomic Approach To Investigate Differences in Wine Yeast Physiology and Metabolism during Fermentation
Debra Rossouw, Roberto Olivares-Hernandes, Jens Nielsen, and Florian F. Bauer
Appl. Environ. Microbiol. October 2009 75: 6600-6612; published ahead of print August 21, 2009, doi:10.1128/AEM.01251-09
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An Mrp-Like Cluster in the Halotolerant Cyanobacterium Aphanothece halophytica Functions as a Na⁺/H⁺ Antiporter
Fuminori Fukaya, Worrawat Promden, Takashi Hibino, Yoshito Tanaka, Tatsunosuke Nakamura, and Teruhiro Takabe
Appl. Environ. Microbiol. October 2009 75: 6626-6629; published ahead of print August 21, 2009, doi:10.1128/AEM.01387-09
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Food Microbiology:

Biofilm Formation and Cell Surface Properties among Pathogenic and Nonpathogenic Strains of the Bacillus cereus Group
Sandrine Auger, Nalini Ramarao, Christine Faille, Agnès Fouet, Stéphane Aymerich, and Michel Gohar
Appl. Environ. Microbiol. October 2009 75: 6616-6618; published ahead of print July 31, 2009, doi:10.1128/AEM.00155-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.