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Microbial Ecology:

Erin J. Biers, Kui Wang, Catherine Pennington, Robert Belas, Feng Chen, and Mary Ann Moran

Occurrence and Expression of Gene Transfer Agent Genes in Marine Bacterioplankton
Appl. Environ. Microbiol. 2008 74: 2933-2939. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Cécile Lepère, Isabelle Domaizon, and Didier Debroas

Unexpected Importance of Potential Parasites in the Composition of the Freshwater Small-Eukaryote Community
Appl. Environ. Microbiol. 2008 74: 2940-2949. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Thaddeus B. Stanton, Samuel B. Humphrey, Vijay K. Sharma, and Richard L. Zuerner

Collateral Effects of Antibiotics: Carbadox and Metronidazole Induce VSH-1 and Facilitate Gene Transfer among Brachyspira hyodysenteriae Strains
Appl. Environ. Microbiol. 2008 74: 2950-2956. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Robert H. Findlay, Christine Yeates, Meredith A. J. Hullar, David A. Stahl, and Louis A. Kaplan

Biome-Level Biogeography of Streambed Microbiota
Appl. Environ. Microbiol. 2008 74: 3014-3021. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

J. B. Larsen, A. Larsen, G. Bratbak, and R.-A. Sandaa

Phylogenetic Analysis of Members of the Phycodnaviridae Virus Family, Using Amplified Fragments of the Major Capsid Protein Gene
Appl. Environ. Microbiol. 2008 74: 3048-3057. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Klaus Michalke, Annette Schmidt, Britta Huber, Jörg Meyer, Margareta Sulkowski, Alfred V. Hirner, Jens Boertz, Frank Mosel, Philip Dammann, Gero Hilken, Hans J. Hedrich, Martina Dorsch, Albert W. Rettenmeier, and Reinhard Hensel

Role of Intestinal Microbiota in Transformation of Bismuth and Other Metals and Metalloids into Volatile Methyl and Hydride Derivatives in Humans and Mice
Appl. Environ. Microbiol. 2008 74: 3069-3075. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Hiroyuki Mizumoto, Yuji Tomaru, Yoshitake Takao, Yoko Shirai, and Keizo Nagasaki

Diverse Responses of the Bivalve-Killing Dinoflagellate Heterocapsa circularisquama to Infection by a Single-Stranded RNA Virus
Appl. Environ. Microbiol. 2008 74: 3105-3111. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Alexandra Hamberger, Marcus A. Horn, Marc G. Dumont, J. Colin Murrell, and Harold L. Drake

Anaerobic Consumers of Monosaccharides in a Moderately Acidic Fen
Appl. Environ. Microbiol. 2008 74: 3112-3120. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Janette L. Jacobs, Anthony C. Fasi, Alban Ramette, James J. Smith, Raymond Hammerschmidt, and George W. Sundin

Identification and Onion Pathogenicity of Burkholderia cepacia Complex Isolates from the Onion Rhizosphere and Onion Field Soil
Appl. Environ. Microbiol. 2008 74: 3121-3129. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Mitsuhiro Yoshida, Takashi Yoshida, Aki Kashima, Yukari Takashima, Naohiko Hosoda, Keizo Nagasaki, and Shingo Hiroishi

Ecological Dynamics of the Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa and Its Cyanophages in Freshwater
Appl. Environ. Microbiol. 2008 74: 3269-3273. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Elke Allers, Christina Niesner, Christian Wild, and Jakob Pernthaler

Microbes Enriched in Seawater after Addition of Coral Mucus
Appl. Environ. Microbiol. 2008 74: 3274-3278. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Martina Herrmann, Aaron M. Saunders, and Andreas Schramm

Archaea Dominate the Ammonia-Oxidizing Community in the Rhizosphere of the Freshwater Macrophyte Littorella uniflora
Appl. Environ. Microbiol. 2008 74: 3279-3283. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Methods:

Zhili He and Jizhong Zhou

Empirical Evaluation of a New Method for Calculating Signal-to-Noise Ratio for Microarray Data Analysis
Appl. Environ. Microbiol. 2008 74: 2957-2966. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Metawee Thongdee, Larry A. Gallagher, Mark Schell, Tararaj Dharakul, Sirirurg Songsivilai, and Colin Manoil

Targeted Mutagenesis of Burkholderia thailandensis and Burkholderia pseudomallei through Natural Transformation of PCR Fragments
Appl. Environ. Microbiol. 2008 74: 2985-2989. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Mark R. Liles, Lynn L. Williamson, Jitsupang Rodbumrer, Vigdis Torsvik, Robert M. Goodman, and Jo Handelsman

Recovery, Purification, and Cloning of High-Molecular-Weight DNA from Soil Microorganisms
Appl. Environ. Microbiol. 2008 74: 3302-3305. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Gaël Belliot, Amandine Lavaux, Donya Souihel, Davide Agnello, and Pierre Pothier

Use of Murine Norovirus as a Surrogate To Evaluate Resistance of Human Norovirus to Disinfectants
Appl. Environ. Microbiol. 2008 74: 3315-3318. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Physiology and Biotechnology:

Ryan D. Woodyer, Nathan J. Wymer, F. Michael Racine, Shama N. Khan, and Badal C. Saha

Efficient Production of L-Ribose with a Recombinant Escherichia coli Biocatalyst
Appl. Environ. Microbiol. 2008 74: 2967-2975. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Andrei Bunescu, Pascale Besse-Hoggan, Martine Sancelme, Gilles Mailhot, and Anne-Marie Delort

Comparison of Microbial and Photochemical Processes and Their Combination for Degradation of 2-Aminobenzothiazole
Appl. Environ. Microbiol. 2008 74: 2976-2984. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Lisa M. Gieg, Kathleen E. Duncan, and Joseph M. Suflita

Bioenergy Production via Microbial Conversion of Residual Oil to Natural Gas
Appl. Environ. Microbiol. 2008 74: 3022-3029. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Pedro M. R. Guimarães, Jyri-Pekka Multanen, Lucília Domingues, José A. Teixeira, and John Londesborough

Stimulation of Zero-trans Rates of Lactose and Maltose Uptake into Yeasts by Preincubation with Hexose To Increase the Adenylate Energy Charge
Appl. Environ. Microbiol. 2008 74: 3076-3084. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Richard J. S. Baerends, Erik de Hulster, Jan-Maarten A. Geertman, Jean-Marc Daran, Antonius J. A. van Maris, Marten Veenhuis, Ida J. van der Klei, and Jack T. Pronk

Engineering and Analysis of a Saccharomyces cerevisiae Strain That Uses Formaldehyde as an Auxiliary Substrate
Appl. Environ. Microbiol. 2008 74: 3182-3188. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Lance Kizer, Douglas J. Pitera, Brian F. Pfleger, and Jay D. Keasling

Application of Functional Genomics to Pathway Optimization for Increased Isoprenoid Production
Appl. Environ. Microbiol. 2008 74: 3229-3241. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

M. T. Fera, T. L. Maugeri, C. Gugliandolo, E. La Camera, V. Lentini, A. Favaloro, D. Bonanno, and M. Carbone

Induction and Resuscitation of Viable Nonculturable Arcobacter butzleri Cells
Appl. Environ. Microbiol. 2008 74: 3266-3268. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

María I. Chávez-Béjar, Alvaro R. Lara, Hezraí López, Georgina Hernández-Chávez, Alfredo Martinez, Octavio T. Ramírez, Francisco Bolívar, and Guillermo Gosset

Metabolic Engineering of Escherichia coli for L-Tyrosine Production by Expression of Genes Coding for the Chorismate Mutase Domain of the Native Chorismate Mutase-Prephenate Dehydratase and a Cyclohexadienyl Dehydrogenase from Zymomonas mobilis
Appl. Environ. Microbiol. 2008 74: 3284-3290. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Filipe Santos, Arno Wegkamp, Willem M. de Vos, Eddy J. Smid, and Jeroen Hugenholtz

High-Level Folate Production in Fermented Foods by the B₁₂ Producer Lactobacillus reuteri JCM1112
Appl. Environ. Microbiol. 2008 74: 3291-3294. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Ivan Jelcic, Eric Hüfner, Herbert Schmidt, and Christian Hertel

Repression of the Locus of the Enterocyte Effacement-Encoded Regulator of Gene Transcription of Escherichia coli O157:H7 by Lactobacillus reuteri Culture Supernatants Is LuxS and Strain Dependent
Appl. Environ. Microbiol. 2008 74: 3310-3314. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Public Health Microbiology:

Elisabetta Lambertini, Susan K. Spencer, Phillip D. Bertz, Frank J. Loge, Burney A. Kieke, and Mark A. Borchardt

Concentration of Enteroviruses, Adenoviruses, and Noroviruses from Drinking Water by Use of Glass Wool Filters
Appl. Environ. Microbiol. 2008 74: 2990-2996. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

M. Boyle, C. Sichel, P. Fernández-Ibáñez, G. B. Arias-Quiroz, M. Iriarte-Puña, A. Mercado, E. Ubomba-Jaswa, and K. G. McGuigan

Bactericidal Effect of Solar Water Disinfection under Real Sunlight Conditions
Appl. Environ. Microbiol. 2008 74: 2997-3001. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yves Thomas, Guido Vogel, Werner Wunderli, Patricia Suter, Mark Witschi, Daniel Koch, Caroline Tapparel, and Laurent Kaiser

Survival of Influenza Virus on Banknotes
Appl. Environ. Microbiol. 2008 74: 3002-3007. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Nathalie Wéry, Valérie Bru-Adan, Céline Minervini, Jean-Philippe Delgénes, Laurent Garrelly, and Jean-Jacques Godon

Dynamics of Legionella spp. and Bacterial Populations during the Proliferation of L. pneumophila in a Cooling Tower Facility
Appl. Environ. Microbiol. 2008 74: 3030-3037. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yann Reynaud, Denis Saulnier, Didier Mazel, Cyrille Goarant, and Frédérique Le Roux

Correlation between Detection of a Plasmid and High-Level Virulence of Vibrio nigripulchritudo, a Pathogen of the Shrimp Litopenaeus stylirostris
Appl. Environ. Microbiol. 2008 74: 3038-3047. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Rachel Thomson, Robyn Carter, Chris Gilpin, Chris Coulter, and Megan Hargreaves

Comparison of Methods for Processing Drinking Water Samples for the Isolation of Mycobacterium avium and Mycobacterium intracellulare
Appl. Environ. Microbiol. 2008 74: 3094-3098. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Ceri A. Morris, A. Denene Blackwood, Marek Kirs, Neil D. Buttigieg, Rhian R. Morgan, James J. Hogan, Ian Weeks, and Rachel T. Noble

Comparison of Transcription-Mediated Amplification and Growth-Based Methods for the Quantitation of Enterococcus Bacteria in Environmental Waters
Appl. Environ. Microbiol. 2008 74: 3319-3320. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Enzymology and Protein Engineering:

Nam-Hee Kim, Hye-Jung Kim, Dong-Il Kang, Ki-Woong Jeong, Jung-Kul Lee, Yangmee Kim, and Deok-Kun Oh

Conversion Shift of D-Fructose to D-Psicose for Enzyme-Catalyzed Epimerization by Addition of Borate
Appl. Environ. Microbiol. 2008 74: 3008-3013. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Genetics and Molecular Biology:

Daniel Krug, Gabriela Zurek, Ole Revermann, Michiel Vos, Gregory J. Velicer, and Rolf Müller

Discovering the Hidden Secondary Metabolome of Myxococcus xanthus: a Study of Intraspecific Diversity
Appl. Environ. Microbiol. 2008 74: 3058-3068. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Thomas J. Santangelo, L'ubomíra Cubonová, and John N. Reeve

Shuttle Vector Expression in Thermococcus kodakaraensis: Contributions of cis Elements to Protein Synthesis in a Hyperthermophilic Archaeon
Appl. Environ. Microbiol. 2008 74: 3099-3104. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Frances R. Slater, Kenneth D. Bruce, Richard J. Ellis, Andrew K. Lilley, and Sarah L. Turner

Heterogeneous Selection in a Spatially Structured Environment Affects Fitness Tradeoffs of Plasmid Carriage in Pseudomonads
Appl. Environ. Microbiol. 2008 74: 3189-3197. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Fang Fang, Sarah Flynn, Yin Li, Marcus J. Claesson, Jan-Peter van Pijkeren, J. Kevin Collins, Douwe van Sinderen, and Paul W. O'Toole

Characterization of Endogenous Plasmids from Lactobacillus salivarius UCC118
Appl. Environ. Microbiol. 2008 74: 3216-3228. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Evolutionary and Genomic Microbiology:

Joyce E. Loper, Marcella D. Henkels, Brenda T. Shaffer, Frederick A. Valeriote, and Harald Gross

Isolation and Identification of Rhizoxin Analogs from Pseudomonas fluorescens Pf-5 by Using a Genomic Mining Strategy
Appl. Environ. Microbiol. 2008 74: 3085-3093. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Margaret F. Romine, Timothy S. Carlson, Angela D. Norbeck, Lee Ann McCue, and Mary S. Lipton

Identification of Mobile Elements and Pseudogenes in the Shewanella oneidensis MR-1 Genome
Appl. Environ. Microbiol. 2008 74: 3257-3265. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Environmental Microbiology:

Yi Zuo, Defeng Xing, John M. Regan, and Bruce E. Logan

Isolation of the Exoelectrogenic Bacterium Ochrobactrum anthropi YZ-1 by Using a U-Tube Microbial Fuel Cell
Appl. Environ. Microbiol. 2008 74: 3130-3137. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Sebastian Behrens, Tina Lösekann, Jennifer Pett-Ridge, Peter K. Weber, Wing-On Ng, Bradley S. Stevenson, Ian D. Hutcheon, David A. Relman, and Alfred M. Spormann

Linking Microbial Phylogeny to Metabolic Activity at the Single-Cell Level by Using Enhanced Element Labeling-Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (EL-FISH) and NanoSIMS
Appl. Environ. Microbiol. 2008 74: 3143-3150. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Food Microbiology:

Haiping Li, Mehrdad Tajkarimi, and Bennie I. Osburn

Impact of Vacuum Cooling on Escherichia coli O157:H7 Infiltration into Lettuce Tissue
Appl. Environ. Microbiol. 2008 74: 3138-3142. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Hariklia Vaikousi, Costas G. Biliaderis, and Konstantinos P. Koutsoumanis

Development of a Microbial Time/Temperature Indicator Prototype for Monitoring the Microbiological Quality of Chilled Foods
Appl. Environ. Microbiol. 2008 74: 3242-3250. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kazuhiko Maeta, Tomoya Ochi, Keisuke Tokimoto, Norihiro Shimomura, Nitaro Maekawa, Nobuhisa Kawaguchi, Makoto Nakaya, Yutaka Kitamoto, and Tadanori Aimi

Rapid Species Identification of Cooked Poisonous Mushrooms by Using Real-Time PCR
Appl. Environ. Microbiol. 2008 74: 3306-3309. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Invertebrate Microbiology:

Piyanate Sunyakumthorn, Apichai Bourchookarn, Walairat Pornwiroon, Connie David, Steven A. Barker, and Kevin R. Macaluso

Characterization and Growth of Polymorphic Rickettsia felis in a Tick Cell Line
Appl. Environ. Microbiol. 2008 74: 3151-3158. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

C. W. Tsai, E. A. McGraw, E.-D. Ammar, R. G. Dietzgen, and S. A. Hogenhout

Drosophila melanogaster Mounts a Unique Immune Response to the Rhabdovirus Sigma virus
Appl. Environ. Microbiol. 2008 74: 3251-3256. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Geomicrobiology:

Denise M. Akob, Heath J. Mills, Thomas M. Gihring, Lee Kerkhof, Joseph W. Stucki, Alexandre S. Anastácio, Kuk-Jeong Chin, Kirsten Küsel, Anthony V. Palumbo, David B. Watson, and Joel E. Kostka

Functional Diversity and Electron Donor Dependence of Microbial Populations Capable of U(VI) Reduction in Radionuclide-Contaminated Subsurface Sediments
Appl. Environ. Microbiol. 2008 74: 3159-3170. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Enoma O. Omoregie, Vincent Mastalerz, Gert de Lange, Kristina L. Straub, Andreas Kappler, Hans Røy, Alina Stadnitskaia, Jean-Paul Foucher, and Antje Boetius

Biogeochemistry and Community Composition of Iron- and Sulfur-Precipitating Microbial Mats at the Chefren Mud Volcano (Nile Deep Sea Fan, Eastern Mediterranean)
Appl. Environ. Microbiol. 2008 74: 3198-3215. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Plant Microbiology:

Shuangchun Yan, Haijie Liu, Toni J. Mohr, Jenny Jenrette, Rossella Chiodini, Massimo Zaccardelli, João C. Setubal, and Boris A. Vinatzer

Role of Recombination in the Evolution of the Model Plant Pathogen Pseudomonas syringae pv. tomato DC3000, a Very Atypical Tomato Strain
Appl. Environ. Microbiol. 2008 74: 3171-3181. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Seyed Mehdi Alavi, Saeideh Sanjari, Fabien Durand, Chrystelle Brin, Charles Manceau, and Stéphane Poussier

Assessment of the Genetic Diversity of Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans as a Basis To Identify Putative Pathogenicity Genes and a Type III Secretion System of the SPI-1 Family by Multiple Suppression Subtractive Hybridizations
Appl. Environ. Microbiol. 2008 74: 3295-3301. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Errata:

ERRATUM
Appl. Environ. Microbiol. 2008 74: 3321. [Full Text] [PDF] [Reprints and Permissions]  

Author's Correction:

Ryan W. Bogard and James D. Oliver

Role of Iron in Human Serum Resistance of the Clinical and Environmental Vibrio vulnificus Genotypes
Appl. Environ. Microbiol. 2008 74: 3322. [Full Text] [PDF] [Reprints and Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.