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Applied and Environmental Microbiology, April 1999, p. 1420-1427, Vol. 65, No. 4
0099-2240/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Isolation and Characterization of
Alfalfa-Nodulating Rhizobia Present in Acidic Soils of Central
Argentina and Uruguay
María F.
del
Papa,1
Laura J.
Balagué,1
Susana Castro
Sowinski,2
Caren
Wegener,3
Eduardo
Segundo,4
Francisco Martínez
Abarca,4
Nicolás
Toro,4
Karsten
Niehaus,3
Alfred
Pühler,3
O. Mario
Aguilar,1
Gloria
Martínez-Drets,2 and
Antonio
Lagares1,*
Instituto de Bioquímica y
Biología Molecular, Facultad de Ciencias Exactas, Universidad
Nacional de La Plata, 1900-La Plata,
Argentina1; División
Bioquímica, Instituto de Investigaciones Biológicas
Clemente Estable, 11600-Montevideo,
Uruguay2; Lehrstuhl für Genetik,
Fakultät für Biologie, Universität Bielefeld,
D-33501 Bielefeld, Germany3; and
Departamento de Microbiología del Suelo y Sistemas
Simbióticos, Estación Experimental del Zaidín,
Consejo Superior de Investigaciones Científicas,
18008-Granada, Spain4
Received 24 August 1998/Accepted 16 January 1999
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ABSTRACT |
We describe the isolation and characterization of
alfalfa-nodulating rhizobia from acid soils of different locations in
Central Argentina and Uruguay. A collection of 465 isolates was
assembled, and the rhizobia were characterized for acid tolerance.
Growth tests revealed the existence of 15 acid-tolerant (AT) isolates which were able to grow at pH 5.0 and formed nodules in alfalfa with a
low rate of nitrogen fixation. Analysis of those isolates, including
partial sequencing of the genes encoding 16S rRNA and genomic
PCR-fingerprinting with MBOREP1 and BOXC1 primers, demonstrated that
the new isolates share a genetic background closely related to that of
the previously reported Rhizobium sp. Or191 recovered from
an acid soil in Oregon (B. D. Eardly, J. P. Young, and
R. K. Selander, Appl. Environ. Microbiol. 58:1809-1815, 1992).
Growth curves, melanin production, temperature tolerance, and
megaplasmid profiles of the AT isolates were all coincident with these
characteristics in strain Or191. In addition to the ability of all of
these strains to nodulate alfalfa (Medicago sativa)
inefficiently, the AT isolates also nodulated the common bean and
Leucaena leucocephala, showing an extended host range for
nodulation of legumes. In alfalfa, the time course of nodule formation
by the AT isolate LPU 83 showed a continued nodulation restricted to
the emerging secondary roots, which was probably related to the low
rate of nitrogen fixation by the largely ineffective nodules. Results
demonstrate the complexity of the rhizobial populations present in the
acidic soils represented by a main group of N2-fixing
rhizobia and a second group of ineffective and less-predominant
isolates related to the AT strain Or191.
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INTRODUCTION |
Over 4 million ha of land throughout
Argentina and Uruguay are used for the production of alfalfa
(Medicago sativa L.) (38). Therefore, it is
important to manage the N2-fixing symbiosis to maximize the
production of this crop. An important constraint to this aim results
from the moderately low soil pH that affects the establishment of an
effective symbiosis with indigenous and inoculated rhizobia. Large
areas of arable lands in the central region of Argentina have
progressively acidified over the last 10 to 20 years (21,
34), where the continuous cultivation over time without crop
rotation has been identified as one of the main factors that favored
the acidification of soils (21, 34).
It has been shown that the poor symbiosis at low pH results from a
variety of influences upon the host plant (24, 27), the
population of rhizobia (31), and the symbiotic interaction itself (11, 36, 41). Early studies by Munns (36,
37) compared the progress of symbiosis under neutral and acid
conditions, concluding that early steps during preinfection are the
more acid-sensitive events (36). This observation is in
agreement with results reported by Caetano Anollés et al. in
1989, who showed a negative influence of low pH on the bacterial
attachment to roots. Most of the fundamental research has sought to
characterize the physiology of the interaction (11, 23, 25, 27,
28) and the effects of acidity in laboratory and in field
experiments (1a, 39) and only more recently to address the
identification of the bacterial determinants of acid tolerance
(18, 43, 44). Particularly, Sinorhizobium
meliloti strains are among the more acid-sensitive rhizobia
(6, 19, 20). Most S. meliloti isolates tolerate
acidity in the range between pH 5.5 and 6.0 (25). Although
there is no basis to support that a higher acid tolerance of the
bacteria will correspond to a better symbiotic performance under acidic
conditions, it was found that acid-tolerant (AT) S. meliloti
strains isolated from nodulated Medicago spp. collected in
Sardinia enhanced the establishment of medic pastures in mildly acidic
soils from Western Australia (23, 25). In any case, although
symbiotic proficiency and acid tolerance of rhizobia are both desirable
bacterial traits, they are not necessarily linked (17, 22, 25, 30,
31). While basic aspects of symbiosis have been extensively
characterized, further work is still needed in order to increase our
knowledge on the rhizobial ecology under suboptimal environmental
conditions such as acidity.
The characterization of the populations of alfalfa-nodulating rhizobia
from acid soils had shown the presence of alfalfa-specific nodulating
S. meliloti and another lineage represented by strain Or191
isolated from Oregon which also nodulates the common bean (13,
15). Strain Or191 was also shown to be more tolerant to acidity
on agar plates (pH 5.2). Results of the genetic characterization indicate that strain Or191 is related to a previously unrecognized taxonomic group that includes strains of Rhizobium phaseoli
type I (15), since renamed Rhizobium etli
(32, 45). The AT strain Or191 was ineffective in alfalfa
(13) but had measurable levels of symbiotic nitrogen
fixation (15).
So far, a detailed examination of the composition of native populations
of alfalfa-nodulating rhizobia in soils from Argentina and Uruguay has
not yet been carried out. In this work, we present results on the
isolation and characterization of alfalfa-nodulating rhizobia from
local acid soils and demonstrate the presence of two rhizobial
populations with marked differences in their acid tolerance and
symbiotic properties.
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MATERIALS AND METHODS |
Plants and microorganisms.
Alfalfa (Medicago
sativa L.) cv. CFU101 seeds were surface sterilized as previously
described (9). The seeds were germinated on inverted
water-agar Petri dishes and used in plant nodulation experiments.
S. meliloti 2011 and Rhizobium sp. strain Or191
were obtained from J. Dénarié (Toulouse, France) and
B. D. Eardly (Reading, Pa.), respectively. Alfalfa-nodulating
rhizobia designed with the prefix LPU (Universidad Nacional de La
Plata, La Plata, Argentina) or CE (Instituto Clemente Estable,
Montevideo, Uruguay) correspond to isolates from Argentina and Uruguay, respectively.
Media and growth conditions.
TY medium (2) or
Luria-Bertani (LB) medium (35) were used for routine
cultivation of rhizobia. The rhizobial growth curves and the screening
of isolates to identify AT strains were both performed with
glutamate-sucrose (GS) minimal medium (27.45 mM sucrose, 18.70 mM
Na-glutamate, 0.15 mM K2HPO4 · 3H2O, 0.15 mM KH2PO4, 0.7 mM
Na2SO4, 1.0 mM MgSO4 · 7H2O, 1.0 mM CaCl2 · 2H2O, 2.95 µM thiamine-HCl, 4.2 µM Ca-pantothenate, 0.08 µM biotin, 48.0 µM H3BO3, 10.0 µM MnSO4,
10.0 µM ZnSO4, 48.0 µM CuSO4, 0.5 µM
CoCl2, 1.0 µM Na2MoO4 · 2H2O, 1.0 µM FeCl3 · 6H2O). Based on previous results by Howieson
(22), GS medium was supplemented with 20 mM MES buffer
[2-(N-morpholino)ethanesulfonic acid] to adjust pH in the
range of 5.5 to 6.0. Twenty millimolar PIPES [piperazine-N,N'-bis(2-ethanesulfonic acid)] was added to
the GS medium to control pH in the range of 6.5 to 7.0. Bacterial cultures in liquid medium were grown at 28°C and at 250 rpm. The kinetics of bacterial growth were studied in GS minimal medium supplemented with MES or PIPES depending on the actual pH of the experiment. The pH was approximated with HCl or KOH prior to
autoclaving and adjusted more precisely after the addition of
filter-sterilized vitamins and micronutrients. The pH of cultures
during bacterial growth was monitored each time that the optical
density was measured.
Isolation of alfalfa-nodulating rhizobia from acid soils.
Preliminary information concerning the agricultural regions affected by
low soil pH was obtained from the INTA (Instituto Nacional de
Tecnología Agropecuaria)-Argentina and from INIA (Instituto
Nacional de Investigaciones Agropecuarias)-Uruguay. Figure
1 shows the geographical locations of the
20 main sampled sites. Alfalfa plants from selected fields were
examined for the presence of root nodules. The collected nodules were
kept in closed containers over silica gel at room temperature until
their isolation in the laboratory. Soil samples were also collected and
investigated for the presence of rhizobia by using alfalfa as the
trapping plant. Nodules collected in the field and in the laboratory
were surface sterilized in 20 volumes of H2O2
(15 min), washed with distilled water, and crushed in 100 µl of
Fåhraeus (16) mineral solution. Bacterial clones isolated
from this suspension in TY (2) agar plates were used to
inoculate alfalfa to confirm the nodulation phenotype.

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FIG. 1.
Geographical distribution of representative locations
where acid soils were sampled in Argentina and Uruguay. The sampled
area extends over the provinces of Buenos Aires, Córdoba, La
Pampa, and Santa Fe in Argentina and over four different Departments in
Uruguay. Representative sampled locations in both countries are shown.
Numbers in the map refer to the main cities located close to each place
of sampling. Numbers in the map refer to the following cities: 1, Arrecifes; 2, Carmen de Areco; 3, San Pedro; 4, Pergamino; 5, La Plata;
6, Castelar; 7, Reconquista; 8, Rafaela; 9, San Francisco; 10, Manfredi; 11, Anguil; and 12, General Pico (all in Argentina); and 13, Paysandú; 14, Colonia; and 15, Canelones (all in Uruguay).
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Megaplasmid profiles.
Cells were grown in rich medium to
mid-log phase. A 100-µl portion of cell suspension was collected in a
microcentrifuge tube and mixed with 500 µl of 0.3% Sarkosyl in TBE
buffer (Tris base, 89 mM; H3BO3, 89 mM; EDTA,
2.5 mM; pH 8.0). The cell suspension was centrifuged 30 s at
14,000 × g, and the supernatant was discarded. The
cell pellet was resuspended in 40 µl of loading buffer (10% sucrose,
0.01 mg of RNase A per ml, and 1 mg of lysozyme per ml) and applied to
a 0.7% agarose gel containing 1% sodium dodecyl sulfate (SDS) in TBE
buffer. Electrophoresis was run for 6 h at 80 V and 10°C.
Plasmid bands were observed under UV illumination after the gel was
stained with 0.5 to 1 µg of ethidium bromide per ml.
Production of melanin.
Melanin production was determined by
the method of Cubo et al. (12), with the following
modifications. Bacterial isolates were streaked on TY agar medium
supplemented with 600 mg of L-tyrosine and 40 mg of
CuSO4 · 5H2O per liter and incubated at
room temperature for 1 week. The presence of a diffusible dark brown
pigment with or without the addition of 50 µl of 10% (wt/vol) SDS in
TBE (pH 8.3) was scored as positive for melanin production.
Sensitivity of LPU and CE isolates to SDS.
The ability of
rhizobial isolates to grow in the presence of hydrophobic compounds was
tested by streaking the bacteria in TY solid medium containing 0.1 g of SDS per liter. Bacterial growth at 28°C was scored 3 to 5 days
after inoculation.
Nodulation tests.
Two-day-old seedlings were transferred to
gamma-irradiated sterilized plastic growth pouches (Mega Minneapolis
International, Minneapolis, Minn.) containing 10 ml of nitrogen-free
Howieson mineral solution (28) (pH 6.7). Three days later,
primary roots were inoculated by dripping 100 µl of bacterial
suspension onto the root from the tip toward the base. The positions of
the root tips (RT) and the smallest emergent root hairs (EH) were
marked on the plastic pouches immediately after inoculation with the aid of a dissecting microscope at a magnification of ×12. The plants
were cultured in a growth chamber at 22°C with a 16-h photoperiod. To
follow the nodulation kinetics, the number of nodules per individual plant in different locations along the root was periodically examined. The precise location of individual nodules to construct complete nodulation profiles was obtained and digitized with the aid of a
magnetic tablet (Genitizer GT1212B) linked to a personal computer. Nodule coordinates were processed by using in-house-developed software
to calculate the number of nodules per unit of root distance at
different root positions (3). Nodulation assays with common beans cv. NAG12 (INTA) and Leucaena leucocephala were
carried out in 200-ml plastic pots containing vermiculite and Jensen
mineral solution, pH 7 (29). Surface-sterilized seeds were
germinated on water-agar (1.5%, wt/vol), and two small seedlings were
transferred to each pot. At sowing, the seedlings were inoculated with
ca. 107 rhizobia/pot. Plant roots were analyzed for the
presence of nodules 45 days after inoculation.
Oligonucleotide primers and PCR conditions. (i) DNA amplification
fingerprints.
Total DNA amplification fingerprints were performed
with MBOREP1 and BOXC1 primers as previously described by Versalovic et al. (46, 47) with minor modifications. The
deoxyoligonucleotide primers were synthesized by DNAgency (Malvern,
Pa.). The sequences of the primers were as follows: MBOREP1
(3'-CCG CCG TTG CCG CCG TTG CCG CCG-5') (47) and
BOXC1 (3'-TGC GGC TASG CTT CCT AGT TTG C-5')
(47). PCR mixtures of 25 µl contained 50 mM Tris (pH 8.3), 500 µg of bovine serum albumin (BSA) per ml, 3 mM
MgCl2, 200 µM deoxynucleoside triphosphates, 1 U of
Taq polymerase (Promega Corp.), a 10 µM concentration of
primer MBOREP1 or BOXC1, and 10 µl of template DNA, obtained
previously by heating a freshly isolated bacterial colony in 50 µl of
distilled water to 100°C for 15 min. The amplifications were carried
out in capillary tubes in an Idaho 1605 Air Thermo Cycler (Idaho
Technology). The cycling conditions were as follows: 94°C for 7 min,
followed by 30 cycles at 94°C for 10 s, at 52°C for 10 s
(MBOREP1) or 60 s (BOXC1), and at 72°C for 2 min. After the
reaction, 10 µl of the PCR products was separated in 1% agarose gels
containing 0.5 to 1 µg of ethidium bromide per ml and photographed by
using Polaroid type 667 film.
(ii) Amplification of nifH sequences.
A primer
pair to amplify a 511-bp DNA fragment of the nifH gene from
different Rhizobium species was used. The sequences of the
primers are as follows: NIFH
, 5'-ATT TCC TTG AAG AGA ACG GTG
C-3'; and NIFH
2, 5'-AGT TCG GCC AGC ATC TGC TCG T-3'
(1). PCR mixtures of 25 µl contained the following:
50 mM Tris, pH 8.3; 500 µg of BSA per ml; 3 mM MgCl2; 200 µM deoxynucleoside triphosphates; 1 U of Taq polymerase
(Promega Corp.); a 0.5 µM concentration of each primer; and 10 µl
of template DNA. Cycling conditions were as follows: 94°C for 15 s, followed by 35 cycles at 94°C for 10 s, at 55°C for 10 s, at 72°C for 20 s, and at 72°C for 1 min. Amplification
products were visualized as described above.
Partial sequencing of the 16S rDNA.
Total DNA from the AT
rhizobia was isolated as by Meade et al. (33). The partial
nucleotide sequences of the 16S rRNA gene (rDNA) were determined by
direct sequencing of appropriate PCR products. A DNA region
corresponding to nucleotides 20 to 338 of Escherichia coli
16S rDNA was amplified from each strain with the universal primers Y1
(5'-TGG CTC AGA ACG AAC GCT GGC GGC-3') and Y2 (5'-CCC
ACT GCT GCC TCC CGT AGG AGT-3') as previously described for
proteobacteria (48). The nucleotide sequence of the PCR products was determined for both strands with an Automatic Laser Fluorescent DNA Sequencer (Pharmacia).
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RESULTS |
Isolation of alfalfa-nodulating rhizobia from moderately acid soils
in central Argentina and Uruguay.
Alfalfa fields from central
Argentina and Uruguay were sampled and investigated for the presence of
alfalfa-nodulating rhizobia (Fig. 1). Since sampling sites were
selected without prior knowledge of the actual pH of the soils, data
presented in Table 1 reflect the
distribution of pH among fields cultured with alfalfa in the studied
region. Approximately 70% of the soil samples had a pH below 6.5. All
soil samples were examined in the laboratory for the presence of
indigenous alfalfa-nodulating rhizobia by using alfalfa as a trap host.
The collection of rhizobia includes a total of 466 isolates from 251 soil samples. Alfalfa plants growing in the field were also sampled and
examined for the presence of root nodules. In most cases, few nodules
could be obtained from alfalfa plants collected in fields of Argentina
(10% of the isolates). In contrast, it was found that about 48% of
the isolates from Uruguay were obtained from alfalfa plants growing in
the field.
Screening for the presence of AT isolates.
In order to
characterize the acid tolerance of the alfalfa-nodulating isolates,
their ability to grow in acid minimal medium was assessed. It was found
that by using sodium glutamate as a nitrogen source instead of ammonium
chloride, growth was initiated by some isolates at pH 5.0. Therefore,
sodium glutamate was routinely used in the medium for our screening.
According to the level of acid tolerance, the isolates were grouped
into different categories as follows: acid-sensitive (AS) rhizobia,
which include isolates able to grow at starting pH above 6.0; and AT
rhizobia, which include isolates that grow at pH 5.0 or lower. A third
phenotype of mid-AT (MAT) rhizobia, which includes isolates able to
grow between pH 5.0 and 6.0, was also considered. However,
classification of isolates as either AS or MAT was not simple due to
variations in the growth behavior of many strains at pH 6.0 ± 0.3. In some cases long lag phases were observed below pH 6. It was
found that about 95% of the isolated rhizobia correspond to the AS or
MAT category, whereas a rather small proportion was found to be AT (only 15 of 466 isolates). All AT isolates were recovered from acidic
soils with a pH between 5.0 and 6.5, and most AS or MAT isolates were
obtained from soils with pH above 6.5. Figure
2 shows the growth curves of a
representative AT isolate, LPU83, compared to the AS control strain
S. meliloti 2011. The isolate LPU83 had similar growth rates
in the range of pH between 5.0 to 7.0, whereas strain S. meliloti 2011 was unable to grow at pH 5.5, and viability
decreased at lower pH. The number of viable cells of S. meliloti 2011 did not change at pH 5.5, but some metabolic activity still appeared to be present. The optical density of the
culture slowly increased, suggesting the production of extracellular metabolites (Fig. 2B). Although cultures were buffered to maintain the
initial pH, an increase in the acidity of the extracellular medium of
about 0.2 to 0.6 pH units was found with isolate LPU83 (pH variations,
Fig. 2). The rest of the AT isolates behaved similarly to LPU83 under
all pH conditions (not shown).

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FIG. 2.
Growth curves of the AT strain LPU83 and the AS S. meliloti 2011 at different pHs in buffered minimal medium. Panels
A through D present the growth curves of strain LPU83 (solid symbols)
and strain 2011 (open symbols) at pH 7.0, 5.5, 5.2, and 5.0, respectively. Circles, optical density; squares, CFU/ml. Changes in the
pH along each experiment were no higher than 0.6 U. The pH
variation induced by strain LPU83 ( ) and strain 2011 ( ) in each
culture is presented below the corresponding set of growth curves. The
given values of CFU per milliliter are the numerical averages of the
number of colonies from at least two replica plates. Differences among
replica plates were lower than 10%. Strains were grown to saturation
in GS minimal medium at pH 7.0 and then inoculated into fresh GS medium
at the different pH values to get an initial concentrations of
106 to 107 CFU/ml. Cultures were incubated at
28°C and at 250 rpm.
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Characterization of the AT alfalfa-nodulating rhizobia.
We
have found that isolate LPU83 was unable to grow either at 37°C or on
LB medium. These are features that clearly differentiated between LPU83
and S. meliloti. This result and the results presented above
prompted us to undertake a phenotypic characterization of our 15 AT
isolates. The results of the study are summarized in Table
2. The phenotypic characteristics were
found to be similar among all 15 AT isolates, as well as similar to
those of strain Or191, isolated in Oregon (13, 15) (Table 2,
isolate Or191).
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TABLE 2.
Phenotypic and genotypic characteristics of
representative alfalfa-nodulating rhizobia isolated from acid soils of
Argentina and Uruguay
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Symbiotic characterization of the AT alfalfa-nodulating
rhizobia.
Nodulation assays to characterize the host range of the
indigenous AT isolates showed that they were able to nodulate
Phaseolus vulgaris as it was also previously described for
the AT strain Or191 (13) (Table 2). We have also found that
the AT isolates here reported and strain Or191 were all able to
nodulate Leucaena leucocephala (Table 2). In order to
characterize the nodulation of alfalfa by AT isolates, the time course
of nodule formation in different parts of the root was evaluated
(nodulation kinetics, Fig. 3). The
pattern of nodulation induced by isolate LPU83 (AT) was compared with
those of strain S. meliloti 2011 (our AS control) and
isolate S. meliloti LPU63 (an indigenous isolate from a
local acid soil found to be a competitive and effective N2
fixer in both neutral and moderately acid conditions). The number of
nodules induced by all rhizobia were similar during the first 2 weeks but increased steadily during the following 3 weeks only in the case of
isolate LPU83 (Fig. 3A). Nodulation by strain LPU83 did not reach a
plateau. The nodulation kinetics on primary roots was found to be
similar for the three rhizobia (Fig. 3B). However, the nodulation
kinetics on secondary roots by isolate LPU83 differed from that of
S. meliloti 2011 and LPU63 (Fig. 3C). Most of the late
nodules were located on secondary roots and continued emerging at the
same rate even 3 weeks postinoculation (Fig. 3B and C), suggesting a
deficiency in the systemic autoregulatory plant response that controls
nodulation (8, 10). Similar results were also found under
more acidic conditions, suggesting that the increased nodulation in
secondary roots is a strain-dependent phenotype. Plant inoculation
experiments demonstrated that all AT isolates were unable to support
plant growth in N-free medium (ineffective phenotype). Indeed, 4 weeks
after inoculation the dry weight of the aereal part of the alfalfa
plants showed no significant difference with the uninoculated control.
Symptoms of nutrient deficiencies similar to those found in the control
were evident 3 weeks after inoculation. Plants inoculated with the AT
isolates died during the fifth week postinoculation.

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FIG. 3.
Kinetics of nodulation of alfalfa roots by
Rhizobium sp. strain LPU83, S. meliloti 2011, and
S. meliloti LPU63. Sets of 74, 88, and 80 plants were
inoculated with 2.96 × 106, 4.90 × 106, and 4.91 × 106 bacteria per plant of
strains LPU83 ( ), 2011 ( ), and LPU63 ( ), respectively. Nodules
on the whole root (A), primary root (B), and secondary roots (C) were
scored at the indicated times. The results are given as the average
numbers of nodules per plant. Where present, the error bars indicate
the standard deviation ( / -n). Results are taken from
a representative experiment among a set of three.
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Genomic characterization of the AT isolates LPU83 and CE20: DNA
amplification fingerprinting and analysis of 16S rDNA.
The degree
of similarity among the AT rhizobia and strain Or191 was investigated
by partial sequencing of the 16S rDNA, and by PCR-fingerprinting
methods. The 16S nucleotide sequence of the AT isolates LPU83 and CE20
was determined and compared to that of strain Or191. CE20 is a
representative AT isolate from Uruguay with characteristics similar to
isolate LPU83 (Table 2). Pairwise comparisons were made between
homologous 260-bp 16S gene segments and showed that the rDNA sequences
of isolates LPU83 and CE20 were identical to each other, as well as to
the published sequence of strain Or191 (15). To determine
whether this similarity could be extended to the whole genome, total
DNA from the AT isolates was compared by using PCR-fingerprinting
methods. The results of this analysis with primers MBOREP1 and BOXC1
are shown in Fig. 4A and B, respectively.
MBOREP1 fingerprint profiles were identical among isolates LPU83,
CE20, and Or191 but were different from that of S. meliloti
2011 (Fig. 4A) and that of strain R. etli CE3 (Table 2).
Similar results were obtained with primer BOXC1, although a
differential amplicon was present in the amplification profile of
isolate LPU83 (Fig. 4B, arrow-labeled band of ca. 700 bp). Taken
together, these results demonstrate that the AT rhizobia have a high
degree of similarity among them and are closely related to strain
Or191.

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FIG. 4.
MBOREP1 and BOXC1 PCR-fingerprinting patterns of
representative AT isolates from central Argentina and Uruguay. Panels A
and B show the patterns of PCR products generated by using chromosomal
DNA of the indicated strains and primer MBOREP1 or BOXC1, respectively.
The DNA molecular-weight standard corresponding to restriction
fragments of the lambda phage digested with HindIII is
indicated on the left side of each panel. The arrow on the right side
designates the differential BOXC1 amplicon of ca. 725 bp, which was
only detected in the AT isolate LPU83. Agarose gels containing ethidium
bromide were photographed with Polaroid type 667 film under UV
illumination. Pictures were scanned with a Hewlett-Packard ScanJet4C
(high resolution), composed with Corel Draw 5, and printed with a
Rainbow-3M dye sublimation primer.
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DISCUSSION |
In this work we examined the population of alfalfa-nodulating
rhizobia recovered from acid soils of Argentina and Uruguay. Of a
collection of 466 indigenous alfalfa-nodulating isolates, 15 were AT
with the ability to grow under laboratory conditions at pH 5.0. It has
been shown elsewhere (20, 25) that the sensitivity of
S. meliloti to acidity is generally observed in the range of pH between 5.6 and 6.0, depending on the strain and the level of
Ca2+ in the culture medium. Although a group of rhizobia
isolated in Oregon and designated S. meliloti were able to
nodulate alfalfa and to grow at pH 5.0 (1), the actual
species assignment of those isolates remains to be established.
The AT isolates described in this work were unrelated to S. meliloti and found to be similar to the strain Or191
(13). All AT isolates were retrieved from soils with a pH
between 5.5 and 6.5. Our results demonstrate the existence of similar
populations of AT alfalfa-nodulating rhizobia in geographically distant
regions that have soil acidity as a common feature. The occurrence of isolates similar to strain Or191 may relate to a better adaptation of
these rhizobia to acidity. The genetic analysis of the AT isolates by
PCR-fingerprinting with MBOREP1 and BOXC1 primers demonstrated a very
homogeneous genetic background, which appears also to be related to
that of strain Or191. The means by which a population of Or191-like
isolates characterized by a limited genetic diversity have spread
geographically still remain to be elucidated. Although a distinctive
aspect of all of the AT isolates is their broad host range for
nodulation of legumes, neither the common bean nor L. leucocephala can be considered as natural hosts for the AT
isolates in the region of central Argentina and Uruguay. It is not
known whether a legume exists with which Or191-like rhizobia are able
to establish a fully efficient symbiotic association in nature.
Although the number of Or191-like isolates in local soils represents a
rather low proportion of the total bacterial population able to
nodulate alfalfa, it has to be considered that over time the proportion
of AT isolates may increase and thus also their significance within the
indigenous alfalfa-compatible rhizobia. In this regard, at least two
characteristics of the AT isolates have to be considered: (i) the
marked tolerance to acidity of Or191-like isolates that might favor
their persistence under acidity in free-living conditions, and (ii) the
abnormal increased nodulation in secondary roots, a phenotype that
might also help the bacteria to evade the acidic environment. We have
also previously shown that under acidic conditions isolate LPU83 was
highly competitive for the nodulation of alfalfa against S. meliloti (42). The persistence of ineffective
alfalfa-nodulating rhizobia is a common yet unexplained observation in
acid soils (1, 4, 5, 14, 40). As previously suggested, this
may be associated with either a gradual loss of the strain
effectiveness as a consequence of soil acidity (7) or with
the presence of promiscuous Rhizobium species which can
ineffectively nodulate alfalfa, as is the case for strain Or191
(13). A number of questions arise. Do acid soils favor the
establishment of the Or191-like rhizobia? If so, are these rhizobia
more saprophytically competent than S. meliloti? Answers to
these questions will be required to assess the actual agricultural
significance of the presence of inefficient AT rhizobia in acidic soils
cultivated with alfalfa. It remains to be examined whether the
occurrence of Or191-like rhizobia in acid soils is a general phenomenon
in alfalfa-growing areas of the world.
 |
ACKNOWLEDGMENTS |
M.F.D.P., L.J.B., and S.C.S. contributed equally to this work.
We are grateful to all of those who helped us to collect nodules in the
field and acid soil samples from geographically distant locations in
Argentina and Uruguay. In particular, we are greatly indebted to A. Perticari from IMYZA-INTA Castelar (Argentina), Turatti (Argentina),
and J. Coll (Uruguay). We are also grateful to Marisa De Giusti for
advice on statistical calculations and to Gabriel Favelukes for
critically reading the manuscript.
O.M.A. and A.L. are members of the Research Career-CONICET (Argentina).
This research was supported by a grant of the Commission of Economic
Communities (grant TS3*-CT94-0265) and partly by CICBA and by the SECYT
(grant PICT 97 No. 01-00032-00627) (Argentina).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Instituto de
Bioquimica y Biologia Molecular, Facultad de Ciencias Exactas,
Universidad Nacional de La Plata, calles 47 y 115, 1900 La Plata,
Argentina. Phone: 54-221-4250497. ext. 31. Fax: 54-221-4833794. E-mail:
lagares{at}biol.unlp.edu.ar.
 |
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Applied and Environmental Microbiology, April 1999, p. 1420-1427, Vol. 65, No. 4
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