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Applied and Environmental Microbiology, April 1999, p. 1405-1412, Vol. 65, No. 4
0099-2240/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Initial Reactions in the Biodegradation of
1-Chloro-4-Nitrobenzene by a Newly Isolated Bacterium, Strain
LW1
Eleftheria
Katsivela,1,*
Victor
Wray,2
Dietmar H.
Pieper,1 and
Rolf-Michael
Wittich1
Division of
Microbiology,1 and Department of
Molecular Structure Research,2 GBF
National
Research Centre for Biotechnology, D-38124 Braunschweig, Germany
Received 28 September 1998/Accepted 6 January 1999
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ABSTRACT |
Bacterial strain LW1, which belongs to the family
Comamonadaceae, utilizes 1-chloro-4-nitrobenzene (1C4NB)
as a sole source of carbon, nitrogen, and energy. Suspensions of
1C4NB-grown cells removed 1C4NB from culture fluids, and there was a
concomitant release of ammonia and chloride. Under anaerobic conditions
LW1 transformed 1C4NB into a product which was identified as
2-amino-5-chlorophenol by 1H and 13C nuclear
magnetic resonance (NMR) spectroscopy and mass spectrometry. This
transformation indicated that there was partial reduction of
the nitro group to the hydroxylamino substituent, followed by Bamberger
rearrangement. In the presence of oxygen but in the absence of NAD, fast transformation of 2-amino-5-chlorophenol into a
transiently stable yellow product was observed with resting cells and
cell extracts. This compound exhibited an absorption maximum at 395 nm
and was further converted to a dead-end product with maxima at 226 and
272 nm. The compound formed was subsequently identified by 1H and 13C NMR spectroscopy and
mass spectrometry as 5-chloropicolinic acid. In
contrast, when NAD was added in the presence of oxygen, only minor
amounts of 5-chloropicolinic acid were formed, and a new
product, which exhibited an absorption maximum at 306 nm, accumulated.
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INTRODUCTION |
Chlorinated nitroaromatic compounds,
which are important building blocks for synthesis of industrial
chemicals, are present in industrial wastes (19) and are
serious environmental pollutants (23). In 1988 the worldwide
production of 1-chloro-4-nitrobenzene (1C4NB) for use as an
intermediate in the industrial production of azo and sulfur dyes
and as a raw material in the production of drugs and pesticides was
120,000 tons (5, 51). The European Economic Community has
declared that 1C4NB is a compound that is particularly harmful and
persistent in the environment and is one of the priority pollutants
(16). 1C4NB causes methemoglobinemia in humans and animals
(26) and reportedly is weakly mutagenic (37) and
carcinogenic (49). Steinwandter, reporting on pollution found in the River Main (Germany), detected 1C4NB, along with other
polychlorinated nitrobenzene compounds, in fish (42). Therefore, waste management and detoxification of this compound are important for protecting the environment and human health.
Little is known about the microbial metabolism of chloronitrobenzenes
which are realcitrant to biological breakdown. Some authors have
observed biological transformation rather than mineralization of these
compounds. Several Pseudomonas species have been reported to
be able to reduce mononitro compounds to the corresponding anilines
under aerobic conditions (34). Resting cells of
Pseudomonas sp. strain CBS3 convert 1C4NB to
4-chloroaniline, N-acetyl-4-chloroaniline, and
4-chloronitrosobenzene at low rates without any further degradation (34). Corbett and Corbett described metabolism of 1C4NB by
the yeast Rhodosporidium sp. via a reductive
pathway which resulted in the formation of 4-chloroacetanilide and
4-chloro-2-hydroxyacetanilide as the major final metabolites
(12). Complete reduction of the nitro group is the first
step in anoxic transformation of chloronitrobenzenes, resulting in the
formation of the corresponding chloroanilines (46).
Abiotic reduction of 1C4NB to 4-chloroaniline in a dissimilatory iron-reducing enrichment culture has also been reported
(21). Stockinger et al. reported that 1C4NB was
removed from wastewater by an initial chemical ozonation, followed
by biotreatment (43). To our knowledge, a report of
biological mineralization of the isomer 1-chloro-3-nitrobenzene is the
only report thus far of mineralization by a mixed culture during
treatment of industrial wastewater in a membrane reactor
(27). However, mineralization of 1C4NB or its isomer by a
single bacterium has not been described previously. Bacterial
strain LW1 is the first strain that uses 1C4NB as a sole source of
carbon, nitrogen, and energy.
As a starting point for biochemical analysis, six distinct potential
pathways for 1C4NB mineralization were considered because of their
occurrence in bacterial strains that degrade halogen group-containing
aromatic compounds (6, 13, 17, 28, 31, 32) and nitro
group-containing aromatic compounds (2, 25, 31, 40) (Fig.
1). To elucidate the initial steps of the
degradative pathway in LW1, we investigated each of the following
possibilities (Fig. 1): reduction of the nitro group to the
hydroxylamino compound, followed by Bamberger rearrangement to form
2-amino-5-chlorophenol (Fig. 1, reaction i); complete reduction of
the nitro substituent to form 4-chloroaniline (Fig. 1, reaction ii);
oxidative elimination of the chloride to form 4-nitrocatechol (Fig. 1,
reaction iii); oxidative elimination of the nitro group to form
4-chlorocatechol (Fig. 1, reaction iv); reductive dehalogenation to
form 4-nitrobenzene (Fig. 1, reaction v); and dehalogenation by a
monooxygenolytic or hydrolytic activity (Fig. 1, reaction vi).

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FIG. 1.
Putative initial reactions with 1C4NB based on studies
of nitrobenzene degradation via catechol (40) or
2-aminophenol (30), nitrobenzene transformation into aniline
(34), reductive dehalogenation (13), and
dehalogenation due to hydrolytic (25) or dioxygenolytic
(32) activity.
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MATERIALS AND METHODS |
Chemicals.
All of the chemicals used were analytical grade
(
99% pure) or very pure (
97% pure). All of the water used was
ultrapure double-distilled water. 1C4NB, 4-chlorophenol, chlorobenzene, 4-nitrocatechol, and 4-chloroaniline were obtained from Fluka (Buchs, Switzerland); 4-nitrophenol was obtained from Sigma Chemical Co. (St. Louis, Mo.); NAD+, NADH, and NADPH were obtained
from Boehringer Mannheim (Mannheim, Germany); nitrobenzene and
hydroquinone were obtained from E. Merck (Darmstadt, Germany); and
1,2,4-trihydroxybenzene and 4-chlorocatechol were obtained from TCI,
Tokyo Kasei Kogyo Co., LRD (Tokyo, Japan). The trimethylsulfonium
hydroxide (TMSH) reagent was obtained from Macherey-Nagel (Düren,
Germany). 2-Amino-5-chlorophenol and 5-chloropicolinic acid were
prepared from 1C4NB by using 1C4NB-grown resting cells of strain LW1 as
described below.
Bacterial strain and culture conditions.
Strain LW1 was
grown aerobically in a mineral salts medium (15) that was
supplemented with 1C4NB as the carbon source and was incubated at
30°C on a rotary shaker at 150 rpm in baffled Erlenmeyer flasks. Due
to its relatively low water solubility (20 mg/liter), 1C4NB was
incubated with the mineral salts medium at 30°C and 150 rpm for
24 h, and the medium was filtered before inoculation to remove the
undissolved crystals. Mineral salts medium containing dissolved 1C4NB
(1.5 mM) was used to determine the degradation kinetics and mass
balances. Scaled-up cultures were grown with an amount of 1C4NB that,
if completely dissolved, corresponded to a concentration of 5 mM. The
mineral salts medium was prepared as described previously
(15). For growth experiments performed with 1C4NB as the
sole nitrogen source, Ca(NO3)2 was replaced by
CaCl2, Fe-ammonium citrate was replaced by
FeCl2 and (NH4)SO4 was replaced by
Na2SO4. Cultures were inoculated (10%, vol/vol) with precultures in the late exponential phase.
Preparation of cell extracts and preparation of resting
cells.
Cells of strain LW1 were harvested at the end of the
exponential growth phase (optical density at 546 nm
[OD546], 0.3). Cells were pelleted by centrifugation at
27,500 × g for 10 min at 4°C, washed twice with 50 mM sodium phosphate buffer (pH 7.2), and resuspended in a small volume
of the same buffer. The suspended cells were disrupted by four passages
through a French pressure cell (Aminco, Silver Spring, Md.) operated at
18,000 lb/in2. Intact cells and insoluble debris were
removed by centrifugation at 40,000 × g for 45 min at
4°C. The supernatant fluid was designated the cell extract and was
used for enzyme assays. Experiments with resting cells were carried out
with washed cells as described above; these cells were resuspended in
10 ml of 50 mM sodium phosphate buffer (pH 7.2) to a final
OD546 of 5. Resting cells were incubated with 1.5 mM
dissolved 1C4NB in a water bath shaker at 30°C.
Extraction, purification, and identification of metabolites.
The metabolites 2-amino-5-chlorophenol and 5-chloropicolinic acid were
purified and characterized as follows. 2-Amino-5-chlorophenol was
prepared biologically from 1C4NB under anaerobic conditions in a glove
box (Coy Laboratory Products, Grass Lake, Mich.) filled with
oxygen-free nitrogen. The reaction mixture initially contained 50 mM
sodium phosphate buffer (pH 7.2), 1.5 mM 1C4NB completely dissolved in
the buffer, and 1C4NB-grown resting cells of strain LW1. The reaction
was carried out at 30°C with continuous stirring, and the progress of
the reaction was monitored by monitoring the formation of
2-amino-5-chlorophenol by high-performance liquid chromatography
(HPLC). Anaerobic conditions were necessary not only during the
biotransformation but also during the work-up. After 6 h of
incubation and complete substrate turnover, the resting cells were
pelleted by centrifugation, and the pH of the supernatant was adjusted
to 12.0 by adding 5 N NaOH. Extraction was performed twice with ethyl
acetate. The organic phase containing 2-amino-5-chlorophenol was
concentrated by evaporation of the organic solvent under a vacuum after it was dried over Na2SO4, and it
was analyzed without further purification by nuclear magnetic resonance
(NMR) and gas chromatography-mass spectrometry (GC-MS). Cell
suspensions containing 2-amino-5-chlorophenol were aerated for 5 min
for preparation of 5-chloropicolinic acid. After complete conversion,
as determined by HPLC, the cells were pelleted by centrifugation. The
pH of the yellow supernatant was adjusted to 2.0 with HCl. The water phase lost its yellow color and was extracted twice with ethyl acetate.
The organic phases were pooled, 5-chloropicolinic acid was concentrated
by evaporation of the organic solvent under a vacuum, and the
preparation was analyzed without further purification by NMR and GC-MS.
Enzyme assays.
2-Amino-5-chlorophenol 1,6-dioxygenase
activity was determined as previously described for the 2-aminophenol
1,6-dioxygenase of Pseudomonas pseudoalcaligenes
(30) by measuring the formation of the ring cleavage product
of 2-amino-5-chlorophenol at 395 nm. The molar extinction coefficient
(E395 = 21 mM
1 cm
1) was
estimated by assuming that all of the 2-amino-5-chlorophenol was
converted to the ring cleavage product under excess enzyme conditions
as described previously (30). 4-Nitrocatechol monooxygenase activities were measured as previously described (18).
Nitrobenzene reductase activity was measured as described previously
(38) by monitoring the decrease in absorption at 340 nm due
to conversion of NADPH to NADP. Catechol 1,2-dioxygenase (EC
1.13.11.1), catechol 2,3-dioxygenase (EC 1.13.11.2), muconate
cycloisomerase (EC 5.5.1.1), and maleylacetate reductase (EC 1.3.1.32)
activities were measured as previously described (36).
1,2,4-Trihydroxybenzene 1,2-dioxygenase activity was determined
qualitatively by monitoring spectral changes between 220 and 400 nm as
described by Stolz and Knackmuss (44). The reaction mixture
contained 1,2,4-trihydroxybenzene (200 µM) and cell extract. Controls
containing 50 mM phosphate buffer (pH 7.2) instead of cell extract were
used to correct for autoxidation of 1,2,4-trihydroxybenzene.
The oxygen uptake rates of resting cell suspensions washed twice with
50 mM sodium phosphate buffer (pH 7.2) were determined polarographically by using a type LTD CB1D electrode (Hansatech, Kings
Lynn, Great Britain). The rates were corrected for endogenous respiration.
One unit of specific activity was defined as 1 µmol of substrate
converted per min per gram of protein or 1 µmol of product formed per
min per gram of protein at 25°C.
The protein contents of cell extracts were determined by using the
Bio-Rad protein assay (Bio-Rad Laboratories, Hercules, Calif.), which
is based on the colorimetric dye-binding procedure of Bradford
(7). The total protein content of LW1 cells was determined
after lysis in the presence of 0.15 M NaOH at 100°C for 10 min and
centrifugation at 27,500 × g for 10 min to remove the
cell debris; the protein assay described above was used.
Analytical methods.
The chloride ion concentration was
measured with a chloride sensor integrated into a flow-injection system
(developed by M. Otto, Fraunhofer Gesellschaft für
Grenzflächen- und Bioverfahrenstechnik, Stuttgart, Germany) as
described previously (4). The nitrite concentration was
determined colorimetrically as described previously (29).
The ammonium ion concentration was measured colorimetrically by using a
Spectroquant kit (E. Merck).
The total organic carbon (TOC) contents of aqueous samples were
determined by using a TOC analyzer (model TOC-5050; Shimadzu Corporation, Kyoto, Japan). Samples were centrifugated at
27,500 × g for 10 min to remove the biomass and then
acidified to pH 2.0 with a 2 N hydrochloric acid solution and degassed
for 5 min with sparge nitrogen gas at a flow rate of 150 ml/min to
remove the inorganic carbon dioxide. The TOC content was measured by the nonpurgeable organic carbon method. The inorganic carbon was first
removed by catalytic conversion of all inorganic carbon to carbon
dioxide, followed by nitrogen sparging. Calibration curves were
obtained by using potassium hydrogen phthalate as the organic carbon standard.
The HPLC analysis was carried out as follows. Water-soluble substrates
and metabolites were analyzed with a Shimadzu HPLC system equipped with
a type SC reversed-phase column (125 by 4.6 mm) filled with Lichrospher
100 RP8 5.0 µm (Bischoff, Leonberg, Germany). An aqueous solvent
system containing 36 to 63% (vol/vol) methanol and 0.1% (vol/vol)
ortho-phosphoric acid in Milli Q water was used as the
mobile phase (flow rate, 1 ml/min). The column effluent was monitored
simultaneously at 210 and 270 nm.
The GC-MS analysis was carried out as follows. A model GC-17A gas
chromatograph (Shimadzu) equipped with a type XTI-5 column obtained
from Resteck (Bellefonte, Pa.) was used. A model QP-5000 quadrupole
mass spectrometer was operated in the electron impact mode at 70 eV
with an ion source temperature of 320°C. Helium was used as the
carrier gas at a flow rate of 1.0 ml/min. The oven temperature was
maintained at 60°C for 2 min, and then it was increased to 150°C at
a rate of 20°C/min and finally to 320°C at a rate of 6°C/min.
Samples (1.0 µl) were injected into the gas chromatography operating
in the splitless mode with an injector temperature of 270°C.
Methylation of metabolites was carried out with the TMSH reagent. One
hundred microliters of the TMSH reagent was added to 50 µl of sample
diluted in methanol, which was then boiled for 10 min (11).
Spectroscopic methods.
High-resolution one-dimensional NMR
spectra (1H, 13C) and two-dimensional NMR
spectra (1H-detected long-range
13C-1H correlations) were recorded with a
Bruker model DPX 300 NMR spectrometer locked onto the major deuterium
resonance of the solvent, CD3OD. Chemical shifts (in parts
per million) were determined relative to tetramethylsilane, and
coupling constants (in hertz) were also determined.
Nucleotide sequence accession number.
A 16S rRNA sequence of
strain LW1 has been deposited in the EMBL database under accession no.
AJ130765.
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RESULTS |
Isolation, characterization, and growth of 1C4NB-degrading strain
LW1.
Strain LW1 was isolated from the River Spittelwasser
(Germany), a highly contaminated tributary of the River Elbe, by
using a previously described enrichment technique (50) and
1C4NB as the sole carbon source. The taxonomy of this strain is
currently under investigation. Results based on 16S rRNA
sequencing showed that strain LW1 belongs to a new subgroup in the
family Comamonadaceae. Investigations by workers at the
German Collection of Microorganisms and Cell Cultures (Braunschweig,
Germany) revealed that this isolate cannot be assigned to the genus
Xylophilus or the genus Acidovorax but represents
a new species belonging to a new genus in the family Comamonadaceae. Strain LW1 utilized 1C4NB as a sole
carbon, nitrogen, and energy source. A growth curve obtained with 1C4NB
as the only substrate is shown in Fig. 2.
The initial concentration of the dissolved carbon source in the culture
fluid was 1.3 mM. Doubling times of 4 to 6 h were observed during
the exponential growth phase. The amount of chloride released (1.3 mM)
indicates that stoichiometric elimination occurred. Accumulation of
ammonium or nitrite was not observed, as determined by the colorimetric assay, nor was metabolite accumulation, as determined by HPLC analysis.
The initial amount of TOC was reduced by 75%.

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FIG. 2.
Growth of bacterial strain LW1 with 1C4NB as the sole
carbon source. The initial concentration of the dissolved carbon source
in the culture fluid was 1.2 mM. The culture was inoculated (10%,
vol/vol) with a preculture grown with 1C4NB and harvested during the
exponential phase. Substrate depletion, formation of chloride, and TOC
values were determined as described in Materials and Methods. Growth
was monitored by monitoring the increase in OD546.
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Growth of strain LW1 with substrate analogues, such as
nitrobenzene and chlorobenzene, and with several
hypothetical pathway intermediates, such as
2-amino-5-chlorophenol (which was biologically prepared in this work),
4-chloroaniline, 4-nitrophenol, 4-nitrocatechol, 4-chlorophenol, and
4-chlorocatechol, was tested in liquid cultures by using each compound
at a concentration of 1 mM, as well as on diffusion gradient agar
plates, which should have prevented toxic effects on bacterial cells.
Only two of these compounds, nitrobenzene and
2-amino-5-chlorophenol, were utilized as carbon sources by LW1.
Aerobic transformation of 1C4NB and of hypothetical pathway
intermediates.
In order to elucidate the pathway of 1C4NB
degradation in strain LW1, oxygen uptake experiments were performed
with growth substrates and several hypothetical intermediates (Table
1). 1C4NB-grown resting cells had an
oxygen uptake rate of 86 U/g of protein with 1C4NB, and the oxygen
uptake rate with 4-chlorocatechol was approximately fourfold lower (23 U/g of protein). Negligible oxygen consumption occurred with
4-chlorophenol, 4-nitrocatechol, 4-nitrophenol, hydroquinone, and
4-chloroaniline.
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TABLE 1.
Relative oxygen uptake rates and conversion rates for
possible pathway intermediates in 1C4NB-grown resting cells
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In contrast, the specific transformation rate (23 U/g of protein) for
1C4NB (1.3 mM) obtained with 1C4NB-grown resting cells (OD546, 6.0), as determined by HPLC, was lower than the
specific oxygen uptake rate. Again, there was no indication that
significant amounts of pathway intermediates accumulated, as determined
by HPLC. Stoichiometric amounts of both chloride (1.4 mM) and ammonium (1.4 mM) accumulated, as determined by colorimetric assays (Fig. 3). Similar results were obtained with
acetate-grown cells, which transformed 1C4NB at a rate of 20 U/g of
protein.

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FIG. 3.
Time course for conversion of 1C4NB by resting cells of
strain LW1 grown with 1C4NB under aerobic conditions. Cell suspensions
at an OD546 of 6.0 were resuspended in 50 mM sodium
phosphate buffer (pH 7.2), and substrate was added to a final
concentration of 1.36 mM. Substrate depletion was determined by HPLC.
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4-Chlorocatechol was transformed by resting cells at a rate of 18 U/g
of protein, which was similar to the measured oxygen uptake rate.
Transformation was accompanied by transient yellow coloration of
the medium. HPLC analysis of the supernatant revealed that there was
transient formation of a metabolite, the in situ UV spectrum
(after HPLC) of which exhibited an absorption maximum at 332 nm.
Formation of small amounts of a new product from
4-chlorocatechol by both 1C4NB-grown resting cells and
acetate-grown resting cells was detected by GC-MS of methylated ethyl
acetate extracts; this new product was later identified as
5-chloropicolinic acid.
When 4-nitrophenol and hydroquinone were used, about 20% of the
substrates were removed from the resting cell suspensions in
6 h, but no products were detected by HPLC. No significant conversion was observed with 4-chloroaniline or 4-nitrocatechol. While there was no significant decrease in the initial
concentration of 4-nitrocatechol (200 µM), a quick change in the
color of the reaction mixture from yellow to orange took place.
No reaction was observed with controls that did not contain cells or
controls that contained cells that had been heat inactivated (10 min,
60°C).
The activities of various possible pathway enzymes in cell extracts are
shown in Table 2. Low nitrobenzene
reductase activities, 2 and 22 U/g of protein with nitrobenzene and
1C4NB as the substrates, respectively, were observed. In contrast to
the observed transformation by whole cells, the cell extracts exhibited
neither catechol 1,2-dioxygenase activity nor catechol 2,3-dioxygenase
activity when 4-chlorocatechol or catechol was the substrate. No
muconate cycloisomerase and chloromuconate cycloisomerase
activities were observed when muconate and 2-chloromuconate were
the substrates, respectively. No 4-nitrocatechol monooxygenase
activity was observed. The spectral changes observed with cell extracts
when 1,2,4-trihydroxybenzene was the substrate indicated that a
1,2,4-trihydroxybenzene 1,2-dioxygenase activity was present. However,
no activity of the potential subsequent pathway enzyme maleylacetate
reductase was observed.
Anaerobic transformation of 1C4NB by 1C4NB-grown resting
cells.
Previous results indicated that the nitro substituent was
reduced, that ammonium rather than nitrite was eliminated, and that a
nitrobenzene reductase was present; therefore, transformation of 1C4NB
in the absence of oxygen should have led to the accumulation of pathway
intermediates. Under anaerobic conditions, LW1 cells grown on 1C4NB
converted 1C4NB into a single product (Fig.
4), later identified as
2-amino-5-chlorophenol. The elimination of chloride or ammonium under
these conditions was negligible. Acetate-grown resting cells of LW1
converted 1C4NB under anaerobic conditions at the same conversion rate.

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FIG. 4.
Time course for conversion of 1C4NB by resting cells of
strain LW1 grown with 1C4NB under anaerobic conditions. Cell
suspensions at an OD546 of 5.0 were resuspended in 50 mM
sodium phosphate buffer (pH 7.2). Substrate was added to a final
concentration of 1.2 mM. Substrate depletion and product formation were
determined by HPLC.
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The metabolite mentioned above had a retention volume of 3.5 ml when an
HPLC solvent system containing 36% (vol/vol) methanol was used and had
an in situ UV absorption spectrum with maxima at 202, 217, and 277 nm
at pH 2.0. The mass spectrum of its methyl ether had a molecular ion at
m/z = 158 (M+), indicative of
C7H8C1NO, and major fragments due to the loss of
CH3 (m/z = 142) and
CH3,
CO (m/z = 114).
The 1H and 13C NMR data (Table
3) were unambiguously assigned on the
basis of the two-dimensional 1H-detected long-range
13C-1H correlation. The 13C
chemical shift data were compatible only with the substitution pattern
of 2-amino-5-chlorophenol, as shown by calculations of the shifts when
the known shifts of 2-aminophenol (8) and the chlorosubstituent chemical shifts (SCS) (45) were used, and they were incompatible with the substitution pattern of
2-chloro-5-aminophenol (with known shifts of 4-chloroaniline
[9] and SCS of an aromatic hydroxyl group
[45]).
Assuming that the new product was 2-amino-5-chlorophenol, we calculated
that transformation of 1C4NB was stoichiometric and occurred at a rate
of 4.5 U/g of protein.
Aerobic transformation of 2-amino-5-chlorophenol.
2-Amino-5-chlorophenol (initial concentration, 0.575 mM) was rapidly
converted into a yellow product by 1C4NB-grown resting cells at a
conversion rate of 820 U/g of protein. An HPLC analysis revealed that a
single product was formed, and this product had a retention
volume of 4.2 ml and an in situ UV spectrum with absorption maxima at
201, 234, and 274 nm. This compound was extracted and derivatized as
described above. The mass spectrum of the methyl ester had a
molecular ion at m/z = 171 (M+),
indicative of C7H6C1NO2. Major
fragments appeared at m/z = 141 (M+
OCH2) and at m/z = 113 (M+
CO2CH2). Loss of HCl from the mass at
112 yielded a mass of 76, which is consistent with the
presence of a pyridine nucleus. These results are similar
to the previously published mass spectrum of the methyl ester of
2-chloropicolinic acid (14).
Again, unambiguous NMR assignments (Table 3) were provided by the
two-dimensional 1H-detected long-range
13C-1H correlation, and both 13C
shift values (with picolinic acid [10] and chloro SCS)
and the magnitude of the one-bond 13C-1H
coupling constants were compatible only with the proposed structure.
The transformation of 2-amino-5-chlorophenol into 5-chloropicolinic
acid was not stoichiometric; only 50% of the substrate was recovered
as 5-chloropicolinic acid (0.267 mM). Despite the fact that no
other products were detected by HPLC, the accumulation of significant
amounts of ammonium (0.124 mM) but negligible amounts of chloride
(0.043 mM) indicated that additional products were formed.
1C4NB-grown resting cells of LW1 had an oxygen uptake rate of 450 U/g of protein when 2-amino-5-chlorophenol was the substrate, which
was fivefold higher than the oxygen uptake rate observed with
1C4NB. Resting cells had very low oxygen uptake rate (8 U/g of protein)
when 5-chloropicolinic acid was the substrate.
2-Amino-5-chlorophenol 1,6-dioxygenase activity.
Cell
extracts catalyzed transformation of both 2-aminophenol and
2-amino-5-chlorophenol, and yellow intermediates with
absorption maxima at 380 and 395 nm, respectively, appeared
and disappeared rapidly. Figure 5A
shows the changes in the UV-visible light spectra during enzyme
reactions when 2-amino-5-chlorophenol was the substrate. When the
initial maximum absorption at 395 nm decreased, absorption at 226 and 272 nm increased. The final absorption spectrum was identical to
that of 5-chloropicolinic acid.

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FIG. 5.
Spectral changes due to 2-amino-5-chlorophenol
1,6-dioxygenase activity in extracts of cells pregrown with 1C4NB. (A)
Reaction mixture containing 2-amino-5-chlorophenol (100 µM) and LW1
cell extract (0.1 mg of protein) in 1 ml of 50 mM sodium phosphate
buffer (pH 7.2). (B) Reaction mixture also containing NAD (100 µM).
Overlay spectra were recorded for 6 min from 220 to 450 nm as
indicated.
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Cell extracts of LW1 catalyzed transformation of 2-amino-5-chlorophenol
and 2-aminophenol with specific activities of 3,570 and 3,020 U/g of
protein, respectively. Figure 5B shows the changes in the UV-visible
light spectra during transformation by cell extracts of
2-amino-5-chlorophenol in the presence of NAD, which differed from the
results of spectrophotometric assays in which NAD was not present by
the presence of a new absorption maximum at 306 nm.
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DISCUSSION |
The accumulation of ammonia but not of nitrite in conversion
experiments performed with resting cells grown with 1C4NB and the
observed 1C4NB reductase activity in LW1 cell extracts suggested that
the initial attack on the nitro group was reductive. The complete
conversion of 1C4NB to 2-amino-5-chlorophenol in the absence of oxygen
indicated that the nitro group was partially reduced. In the proposed
pathway, the nitro group is partially reduced to a hydroxylamino group;
this is followed by an enzyme-catalyzed Bamberger rearrangement to form
2-aminophenol (30), whereas a nonenzymatic Bamberger
rearrangement results in the formation of the corresponding
4-aminophenol (39). Formation of 2-aminophenol as the only
intermediate has also been reported for nitrobenzene degradation by
Pseudomonas pseudoalcaligenes JS45 (30) and for 4-nitrotoluene degradation by a Mycobacterium strain
(41). Similarly, 3-nitrophenol was transformed by
Ralstonia eutropha JMP 134 into aminohydroquinone but not
into 4-aminocatechol (35). In contrast to the high
regioselectivity of the rearrangement observed during transformation of
the growth-supporting substrate 3-nitrophenol, nitrobenzene, which does
not serve as a growth substrate, was transformed into both
2-aminophenol and 4-aminophenol by this strain (35).
Such rearrangements of the hydroxyl substituents at both the
ortho and para positions have also been reported
for 4-chlorohydroxylamino benzene transformation by
Rhodosporidium sp. (12). It has been
assumed that a similar reaction occurs during transformation of
2,4,6-trinitrotoluene by Clostridium acetobutylicum
(22). 2-Amino-5-chlorophenol, but not
4-amino-5-chlorophenol, was formed as an intermediate during
degradation of 1C4NB by LW1. Evidently, in microorganisms able to
mineralize nitroaromatic compounds via a pathway involving
Bamberger rearrangement, this rearrangement leads exclusively to the
formation of 2-aminophenols, which are subject to meta cleavage.
The transformation of 2-aminophenol by LW1 cell extracts was similar to
the transformation of 2-aminophenol by P. pseudoalcaligenes JS45 1,6-dioxygenase
(30). The ring cleavage product cyclized spontaneously to
form picolinic acid. Similarly, the ring cleavage product of
2-amino-5-chlorophenol with a UV maximum at 395 nm (probably
2-amino-5-chloromuconic semialdehyde) intramolecularly condensed to
give 5-chloropicolinic acid. As this compound was not a
growth substrate and was not transformed further by whole cells or cell
extracts, a degradative pathway involving this compound as an
intermediate is highly unlikely. Such abiotic chemical rearrangements may take place when an unstable intermediate is formed and the activity
of the subsequent pathway enzyme is insufficient under the conditions
used. When 2-amino-5-chlorophenol was the substrate, high
transformation rates were observed. A pathway bottleneck presumably
prevented the complete conversion of the semialdehyde formed,
which led to the accumulation of 5-chloropicolinic acid. In
contrast, when 1C4NB was the substrate, the rate-limiting initial reduction (low 1C4NB reductase activity) suggests that the rate of
formation of the semialdehyde was low, so that additional pathway enzymes could quantitatively channel the intermediate into the productive route. In accordance with this hypothesis, only traces of
5-chloropicolinic acid (<50 µM) accumulated in both growing and
resting LW1 cultures when 1C4NB was used as the substrate.
Formation of picolinic acid as a dead-end product has been reported in
many studies, and this compound has been shown to arise from abiotic
intramolecular condensation of enzymatically formed 2-aminomuconic
semialdehyde derivatives (1, 24, 41). Asano et al. described
the chemical synthesis of various picolinic acid derivatives
from ammonia and 2-hydroxymuconic semialdehyde derivatives which had
been biologically prepared from various catechols by using catechol
2,3-dioxygenase (3). Similarly, Davison et al. described the
abiotic formation of halopicolinic acids from substituted 2-halohydroxymuconic semialdehydes formed during degradation of chloro-
and bromobiphenyls by Sphingomonas paucimobilis BPSI-3 (14). Riegert et al. used this abiotic transformation to
determine the structure of the ring fission product of 3-chlorocatechol obtained during 2,3-dihydroxybiphenyl 1,2-dioxygenase activity of
Sphingomonas sp. strain BN6 (33). The nitrogens
present in picolinic acid formed from 2-aminophenol by P. pseudoalcaligenes JS45 (30) and in 5-chloropicolinic
acid formed from 2-amino-5-chlorophenol by LW1, however, clearly
originated from the substrates.
The high activities observed with both 2-aminophenol and
2-amino-5-chlorophenol in LW1 cell extracts indicated that a
2-amino-5-chlorophenol 1,6-dioxygenase with high substrate
specificity was present. Neither catechol nor 4-chlorocatechol was
transformed by cell extracts. Similar substrate specificity was
observed for the 6-amino-m-cresol 1,6-dioxygenase of a
Mycobacterium strain which was shown to be active against
2-aminophenol and the pathway intermediate 6-amino-m-cresol but not against catechol or 4-methylcatechol (41). In
contrast, the 2-aminophenol 1,6-dioxygenase of P. pseudoalcaligenes JS45 exhibited significant activity with
catechol (24). Additional substituents in both the
2-aminophenol structure and the catechol structure severely diminished
or abolished activity. 2-Aminophenol 1,6-dioxygenase of
Pseudomonas sp. strain AP-3 also catalyzed the catechol
reaction (1). The amino acid sequence of
b-subunit AmnB of purified 2-aminophenol 1,6-dioxygenase of
Pseudomonas sp. strain AP-3 exhibited similarities to the
amino acid sequences of extradiol dioxygenases (48).
Lendenmann and Spain suggested that the purified 2-aminophenol
1,6-dioxygenase of P. pseudoalcaligenes JS45 is also
related to catechol 2,3-dioxygenases (24). How much
differences in substrate specificity are reflected by evolutionary relationships still must be elucidated.
The catabolic pathway responsible for transformation of 1C4NB (Fig.
6) seems to be constitutively expressed
in LW1, as similar conversion rates for 1C4NB and
2-amino-5-chlorophenol were obtained with 1C4NB-grown cells and
acetate-grown cells (data not shown). This contrasts with the situation
in recently described 3-nitrophenol- and 4-nitrotoluene-degrading
organisms (35, 37, 43), whose cells did not transform the
respective substrates when they were grown under noninducing
conditions.

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|
FIG. 6.
Proposed pathway for catabolism of 1C4NB by bacterial
strain LW1. The ring cleavage product 2-amino-5-chloromuconic
semialdehyde can be subject to dehydrogenation (probably producing
2-amino-5-chloromuconic acid) or intramolecular condensation to form
the dead-end product 5-chloropicolinic acid as previously reported for
2-aminophenol transformation by P. pseudoalcaligenes
JS45 (20) or by Pseudomonas sp. strain AP-3
(48).
|
|
As described above, extracts of 1C4NB-grown cells of LW1, like extracts
of nitrobenzene-grown cells of P. pseudoalcaligenes JS45, transformed 2-aminophenol into
picolinic acid (30). In both cases addition of NAD to
reaction mixtures containing 2-aminophenol and cell extracts reduced
the formation of picolinic acid and resulted in transient accumulation
of NADH and formation of 2-aminomuconate (20). In
P. pseudoalcaligenes JS45, 2-aminomuconate was further transformed by 2-aminomuconate deaminase into
2-oxohex-3-ene-1,6-dioate, which, in turn, can be assumed to be
degraded to Krebs cycle intermediates by enzymes of the classical
meta-cleavage pathway (20). It has recently been
postulated that there is an alternative pathway for 2-aminophenol
degradation in Pseudomonas sp. strain AP-3
(47). Takenaka et al. postulated that there is an
initial decarboxylation of the intermediate 2-aminomuconic
acid, based on identification of 2-aminopenta-2,4-dienoic acid as
an intermediate, which is subject to deamination, resulting in
2-oxopent-4-enoic acid (47).
Whereas spectrophotometric monitoring of the progress of
2-aminophenol transformation by LW1 cell extracts in the
presence of NAD gave no indication that pathway intermediates were
formed, a product exhibiting an absorption maximum at 306 nm
accumulated during 2-amino-5-chlorophenol transformation. This product
interfered with spectrophotometric monitoring of the accumulating NADH.
If it is assumed that there is a pathway in LW1 for the degradation of
2-amino-5-chlorophenol similar to the pathway characterized by He and
Spain (20) and Takenaka et al. (47) for
2-aminophenol degradation, it can be assumed that
2-amino-5-chloromuconate and 5-chloro-2-oxohex-3-ene-1,6-dioate
or 2-aminopenta-2,4-dienoate are intermediates. 2-Aminomuconate
has been reported to exhibit an absorption maximum at 326 nm
(20). Whether the new absorption maximum at 306 nm can be
attributed to transient accumulation of 2-amino-5-chloromuconate or
transient accumulation of 5-chloro-2-hydroxymuconate will be the
subject of further investigation. Although the growth substrate 1C4NB
is transformed by LW1 at a low rate, the pathway intermediate
2-amino-5-chlorophenol is transformed very rapidly, so that
subsequently, active pathway enzymes cannot adequately turn over the
intermediates. In addition to the accumulation of 5-chloropicolinic
acid, the increase in absorbance at 306 nm mentioned above indicates
that there is a second pathway bottleneck. Moreover, the observed
elimination of larger amounts of ammonium than of chloride during
resting cell-mediated transformation of 2-amino-5-chlorophenol could
indicate that ammonium elimination precedes dechlorination. The next
steps of the pathway, including those responsible for elimination of
ammonium and chloride in LW1, are currently under investigation.
 |
ACKNOWLEDGMENTS |
This work was supported by grant ENV4 CT 93-0081 from the
European Union Environment and Climate Program.
Michael Klemba kindly helped prepare the manuscript and proofread it.
We thank Margit Mau for 16S rRNA sequencing of strain LW1 and Tilmann
Spiess and Andreas Schenzle for helpful discussions concerning the
anaerobic biotransformations.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Division of
Microbiology, GBF
National Research Centre for Biotechnology,
Mascheroder Weg 1, D-38124 Braunschweig, Germany. Phone: 49 531 6181409. Fax: 49 531 6181411. E-mail: EKA{at}gbf.de.
 |
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