Previous Article | Next Article 
Appl Environ Microbiol. 1993 March; 59(3): 915-918
Direct extraction and purification of rRNA for ecological studies.
M A Moran,
V L Torsvik,
T Torsvik and
R E Hodson
Department of Microbiology, University of Georgia, Athens 30602-2605.
ABSTRACT
Microgram quantities of rRNA were recovered from natural microbial communities in sediment, soil, and water with a lysozyme-hot phenol direct extraction method. Gel filtration with Sephadex G-75 spun columns readily removed humic-like contaminants without any measurable loss of rRNA and rendered RNA extracts of sufficient quality for molecular procedures.
Appl Environ Microbiol. 1993 March; 59(3): 915-918
This article has been cited by other articles:
-
Koizumi, Y., Kojima, H., Fukui, M.
(2004). Dominant Microbial Composition and Its Vertical Distribution in Saline Meromictic Lake Kaiike (Japan) as Revealed by Quantitative Oligonucleotide Probe Membrane Hybridization. Appl. Environ. Microbiol.
70: 4930-4940
[Abstract]
[Full Text]
-
Uyeno, Y., Sekiguchi, Y., Sunaga, A., Yoshida, H., Kamagata, Y.
(2004). Sequence-Specific Cleavage of Small-Subunit (SSU) rRNA with Oligonucleotides and RNase H: a Rapid and Simple Approach to SSU rRNA-Based Quantitative Detection of Microorganisms. Appl. Environ. Microbiol.
70: 3650-3663
[Abstract]
[Full Text]
-
Burgmann, H., Widmer, F., Sigler, W. V., Zeyer, J.
(2003). mRNA Extraction and Reverse Transcription-PCR Protocol for Detection of nifH Gene Expression by Azotobacter vinelandii in Soil. Appl. Environ. Microbiol.
69: 1928-1935
[Abstract]
[Full Text]
-
Koizumi, Y., Kelly, J. J., Nakagawa, T., Urakawa, H., El-Fantroussi, S., Al-Muzaini, S., Fukui, M., Urushigawa, Y., Stahl, D. A.
(2002). Parallel Characterization of Anaerobic Toluene- and Ethylbenzene-Degrading Microbial Consortia by PCR-Denaturing Gradient Gel Electrophoresis, RNA-DNA Membrane Hybridization, and DNA Microarray Technology. Appl. Environ. Microbiol.
68: 3215-3225
[Abstract]
[Full Text]
-
Lueders, T., Friedrich, M. W.
(2002). Effects of Amendment with Ferrihydrite and Gypsum on the Structure and Activity of Methanogenic Populations in Rice Field Soil. Appl. Environ. Microbiol.
68: 2484-2494
[Abstract]
[Full Text]
-
Hurt, R. A., Qiu, X., Wu, L., Roh, Y., Palumbo, A. V., Tiedje, J. M., Zhou, J.
(2001). Simultaneous Recovery of RNA and DNA from Soils and Sediments. Appl. Environ. Microbiol.
67: 4495-4503
[Abstract]
[Full Text]
-
Duineveld, B. M., Kowalchuk, G. A., Keijzer, A., van Elsas, J. D., van Veen, J. A.
(2001). Analysis of Bacterial Communities in the Rhizosphere of Chrysanthemum via Denaturing Gradient Gel Electrophoresis of PCR-Amplified 16S rRNA as Well as DNA Fragments Coding for 16S rRNA. Appl. Environ. Microbiol.
67: 172-178
[Abstract]
[Full Text]
-
Griffiths, R. I., Whiteley, A. S., O'Donnell, A. G., Bailey, M. J.
(2000). Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition. Appl. Environ. Microbiol.
66: 5488-5491
[Abstract]
[Full Text]
-
Alm, E. W., Zheng, D., Raskin, L.
(2000). The Presence of Humic Substances and DNA in RNA Extracts Affects Hybridization Results. Appl. Environ. Microbiol.
66: 4547-4554
[Abstract]
[Full Text]
-
Frischer, M. E., Danforth, J. M., Healy, M. A. N., Saunders, F. M.
(2000). Whole-Cell versus Total RNA Extraction for Analysis of Microbial Community Structure with 16S rRNA-Targeted Oligonucleotide Probes in Salt Marsh Sediments. Appl. Environ. Microbiol.
66: 3037-3043
[Abstract]
[Full Text]
-
King, J. K., Kostka, J. E., Frischer, M. E., Saunders, F. M.
(2000). Sulfate-Reducing Bacteria Methylate Mercury at Variable Rates in Pure Culture and in Marine Sediments. Appl. Environ. Microbiol.
66: 2430-2437
[Abstract]
[Full Text]
-
Lüdemann, H., Arth, I., Liesack, W.
(2000). Spatial Changes in the Bacterial Community Structure along a Vertical Oxygen Gradient in Flooded Paddy Soil Cores. Appl. Environ. Microbiol.
66: 754-762
[Abstract]
[Full Text]
-
Henckel, T., Friedrich, M., Conrad, R.
(1999). Molecular Analyses of the Methane-Oxidizing Microbial Community in Rice Field Soil by Targeting the Genes of the 16S rRNA, Particulate Methane Monooxygenase, and Methanol Dehydrogenase. Appl. Environ. Microbiol.
65: 1980-1990
[Abstract]
[Full Text]
-
Dell'Anno, A., Fabiano, M., Duineveld, G. C. A., Kok, A., Danovaro, R.
(1998). Nucleic Acid (DNA, RNA) Quantification and RNA/DNA Ratio Determination in Marine Sediments: Comparison of Spectrophotometric, Fluorometric, and HighPerformance Liquid Chromatography Methods and Estimation of Detrital DNA. Appl. Environ. Microbiol.
64: 3238-3245
[Abstract]
[Full Text]
Copyright © 1993 by the American Society for Microbiology. All rights reserved.